Trichoplusia ni (cabbage looper): 113499024
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Entry
113499024 CDS
T05757
Name
(RefSeq) RING finger protein nhl-1 isoform X1
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113499024
04121 Ubiquitin system [BR:
tnl04121
]
113499024
Enzymes [BR:
tnl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113499024
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113499024
Ubiquitin system [BR:
tnl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
113499024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
DUF5128
SGL
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
zf-RING_2
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
113499024
NCBI-ProteinID:
XP_026735136
UniProt:
A0A7E5W3D8
LinkDB
All DBs
Position
11:complement(12531987..12619713)
Genome browser
AA seq
1230 aa
AA seq
DB search
MEQFESLLTCCVCLDRYRNPKLLPCQHSFCMEPCMDGLVDYVRRQVKCPECRAEHRIPYQ
GVQGFPTNVTLQRFLELHANIAGELPDPTAGQVMERCNVCSEKAYCAPCAHCDKKVCEDC
KSAHMEVLRREISRINNQIRRGLNRLQDILGVVERNTINLQTNCGAVAGEVDEIHKRLAK
ALKDRTDFLRNEVDRYLATELRNLTNLKDNLELELGNIQSNCDLADKYMNDDVEWEDTEL
VDTKEIFLKTVEFLRNFDYEAGDYNRRVRFIMTHDPNQLVMHVASYGELNITQPNAYSSG
IQQNQGLTRSKSDHRLATQFRQQEEAKGWQENDEPILGGRKFGERRPPPPEKHTRDYGAA
DDYSGYESEHRPTRSRFRSRFVKSHLDNDSDTEQSSRSVKAEQKEKEKEKVTDTEDATRG
PLSGIFRLSDCPRVMQRILDVDSGKKKEKKEPPPPPKPVQPTPQARRPPPAQRQQSEDDE
ISRLKRQNKGAASSQEPERAPARPAQEEERNSINRKPPTPAREASSDGESDDESVGSLQR
NQRKTAPAAQKPATTPRRPSATEAPATHRPAARAPSTESSASTESSGSAVKHTGAILSIA
ELMEKYSPGSTSPTPRSRFSSAGNERTAPAATNGTTGGAQRVQSRFVGSQRPTPAPAPAE
PAHEDSDTSSEEETDSSEESDEEPVTQRKPESQAMARSDIGPLLARSTNARNDAADNKPK
ETPATQSRYRTRQTSQTEEEPAPRYSAGSSFSNRYGSKPREEEPPSSIDDETKYPTARSR
YLALKERRNRLARSKSSHTGFGAGDDDDQDDPVSPTTASPSAYLAARYGSGTGGTELSRS
RSSHALKSRESSPERPTPGAEKDGAALSSWARYLKNKYGSRGKDRDPSSTSSSTSRRLSL
GLPLRSANELASSDDDSKNAAGSPISPTAATAAVAGFAAAGSSPRSQYMQKRRLQFSVGS
RGSEPGCFTWPRGIAVGPDNTMVVADSSNHRVQVFDSNGIFVKEFGQYGSGEGEFDCLAG
VAVNRIGQYIIADRYNHRIQVFDPQGRFLRAFGSQGTGDGKFNYPWGITTDALGFIYVCD
KENHRVQVFQSDGTFVGKFGSFGSKLGQLEHPHYIAVSSTNRVLVSDSNNHRIQVFDVNG
RVLSSFGEEGSEDGQFKFPRGVAVDDQGYIVVADSGNNRIQIFHPDGTFLRAFGSWGSGD
GEFKGLEGIAVMSGGNIIVCDRENHRVQVF
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtttgagtcgttgctgacgtgctgcgtctgcttagaccggtacaggaaccct
aagctgttgccatgtcagcacagcttctgtatggagccgtgcatggacggccttgtcgac
tacgtcaggcgacaggtgaaatgtccagaatgtcgtgccgagcaccggattccataccaa
ggcgtccagggatttccaacaaacgttactcttcagcgattcttggagcttcatgccaac
attgctggagagcttcctgaccctacagctgggcaggtcatggaaagatgtaacgtgtgc
tcagaaaaagcatactgcgcgccatgtgcccattgcgacaagaaagtctgtgaagactgc
aagtcagcacacatggaagtgctgcgtagggaaatttcaagaatcaacaatcaaattcgc
cgaggcctcaacagacttcaggatatcctcggagtggttgaacgcaacaccataaacctc
cagactaactgcggagcagtagccggagaggttgacgaaatacataaaagactagcgaag
gcactgaaggatagaaccgatttcttaagaaacgaagtcgatcgctacttagccactgaa
ctaagaaacctcactaatctgaaagataacctagagttagaattaggaaatatacaaagt
aattgtgatctcgccgataaatatatgaacgatgacgtagaatgggaagacacggagtta
gtagacactaaagaaatcttcctcaaaacagtcgagttccttagaaactttgattacgaa
gctggcgactacaatcgcagagtacgatttattatgacgcatgatcctaatcaacttgtc
atgcacgtcgccagttatggtgaactgaatatcactcaacccaacgcgtactcttcagga
atccaacagaaccaaggactgacaaggtccaagagtgatcatagattagcaacgcaattc
cgtcaacaggaggaagcgaaaggatggcaagaaaacgatgaaccgatactcggtggtcgt
aaatttggtgaacgtcgaccaccgccgcccgaaaaacatacccgagactacggtgctgct
gatgactacagcggctatgagtctgaacacagaccaactcggtcaaggttccgttcgcgt
tttgtaaaaagtcatctagacaatgacagtgacactgaacaatcaagtcgctctgtcaaa
gctgaacagaaagagaaggagaaggagaaagtaactgatactgaagatgccactcgtgga
ccgctcagtggtatattcagacttagtgactgtccgcgtgtcatgcaaagaatattagac
gtagacagcggtaagaagaaagaaaaaaaagaacctcctccacctcctaagcccgtccag
cccacacctcaagcgcgtcgtcctcctcccgcacagaggcaacaaagcgaggacgatgag
atatcacgtctcaagaggcagaacaaaggtgccgcctcatcacaagagccagagcgtgct
cctgcacgacctgctcaagaagaagaacgaaactcaattaaccgtaaaccacctacaccg
gctcgggaggcgtcaagtgatggtgaatccgacgacgaatctgttggatctcttcaaaga
aatcagcgaaaaactgcccctgcggctcaaaaaccggcaacaactcctaggagaccctcg
gctaccgaggcaccagcaacacaccgtccagccgctcgtgcacctagcactgaatctagt
gcatcgacagaaagctccggctcggcggtgaaacacacaggtgccattttaagcatcgct
gaattaatggaaaagtacagccccgggtcgacttcgccaactccaagatctcgtttctct
tccgcaggcaacgaacgaacagctccggccgctacaaacggtacaacaggcggcgcacag
cgggtccagagccgttttgttggctcacaacgacccacgcctgcaccggcacccgccgag
ccggctcacgaggactccgacacgagttccgaggaagaaaccgattcgtcggaggagagc
gacgaggagcctgttacgcaaagaaagcccgagagccaggcgatggctcgcagcgacatc
ggtccgctactagctcgtagcacaaacgctcgtaatgacgctgctgacaacaagcccaaa
gagacccccgctactcaatcgcgataccgcacgcgacaaacctcacaaaccgaagaagaa
cctgcgcctagatatagcgctggatcttcgtttagcaatcgctatggaagtaaacctaga
gaggaagaacctccatcgtctatagacgatgagactaaataccccacagctagatcgagg
tacctcgccctgaaagaacgccgtaatcgtcttgctagaagtaaaagcagccacaccggc
ttcggtgctggagacgatgacgatcaggacgatccggtatcccctaccacagcatctcct
tccgcgtatcttgcggctcgatacggctccggcactggtggtacggagttgtctcgcagc
cggtcgtcacacgcgctaaagtctagagagagctcgcctgagcgacccacacccggagcc
gaaaaagacggagcggctcttagttcctgggcgagatatttaaaaaacaaatacggatcg
cggggcaaggatcgcgatcctagcagtacatcgtcgagcacgtcacgtcgcctgtctctc
gggctacctttacgctcggcaaacgagcttgccagttcggatgacgattcaaaaaacgcg
gcaggctcccccatctcccctacggcggctacagcagcggtagcaggtttcgcagcagcc
ggttcctcccctaggagccagtacatgcagaaacgccgtttacaattcagcgtggggagt
cgggggagcgaacccggttgttttacatggcctcgtggtatcgctgtaggtcccgacaac
actatggtcgtggctgattcatcaaaccacagagttcaggtgttcgattccaacggtatc
tttgtgaaggagtttggacagtacggcagcggtgaaggcgaattcgactgtctcgctggc
gttgctgtcaaccgcattggacagtatatcattgcggatagatataatcatcgtattcaa
gtattcgatcctcaaggtcgattcctaagggcgttcggcagtcagggcactggcgatggc
aagttcaattacccctggggcatcactacggacgcgctcggatttatttacgtctgtgac
aaggaaaaccatagagtacaggtattccagtccgatggcacgttcgttggcaagttcgga
tccttcgggtctaagcttggtcagctggagcatccccactacatcgccgtgtccagtacc
aacagggtcctggtgtccgactccaacaaccataggatacaggtcttcgatgtcaacgga
agagtcctctcgtcatttggcgaggaaggctccgaagatggacagttcaagttcccgagg
ggtgtagcggtagacgaccaaggctacatcgtggttgccgactccggcaacaaccgcatc
cagatcttccaccctgacggcaccttcctcagagcctttggttcctggggatctggtgac
ggagagttcaagggtctggaaggcatcgccgtcatgtccggcgggaacatcatcgtctgc
gaccgagagaatcatagagtacaagtgttttaa
DBGET
integrated database retrieval system
