Trichoplusia ni (cabbage looper): 113499285
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Entry
113499285 CDS
T05757
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03022
Basal transcription factors
tnl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113499285
09124 Replication and repair
03420 Nucleotide excision repair
113499285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tnl03021
]
113499285
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113499285
Transcription machinery [BR:
tnl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113499285
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113499285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
MDFI
Motif
Other DBs
NCBI-GeneID:
113499285
NCBI-ProteinID:
XP_026735505
UniProt:
A0A7E5W4G7
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Position
12:complement(11458882..11470648)
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AA seq
571 aa
AA seq
DB search
MTTSSEDVLLSVGYVRFKKGYGTLYVMNQRLAWMLENSDTVAVSHKYADIKTQKISPVGK
PKVQLQVVLHDGTCSTFHFVNPAGAEEQAKDRDQVKMLLQNLLPKFKRQIDGELEMKSRL
LSLHPTLKHLYEDLVISKVINSEEYWNTPTLKTYTESNNVKQEAGVSGAFLADIQPQTDG
CNGLKYNLTQDIIDAIFKTYPAVRKKHVDYVPNKMTEAEFWTKFFQSHYFHRDRIASSSS
KDLFGECAKLDDQAIASAMKHTTLDLTVDLPQFTETIPLLPSEDDAPPEKDRGDSTSIHR
NMIKRFNQHSIMVLKASHKTNSSNNNNSSSKTTNNNKVVENGVKEPNGVTEKRTAEESST
EAPNKKQRILEKLHYEDLKDSGNNEDMQELKLSKIERYLLGPSTQTHQSNTYTNPPPLSA
LASICQAWSSGQQCARPVRVSAGACVAALGELSPGGALMRHHHAASMAQLIPPDVKSELH
RIYLSGGELLRELWRCFPQPGSADAEDSSARAEKFYEALLRFRNVKLRPFEEKMLRDLTP
LATTLTRHMNQMIDTACAKYAMWQQRQAKLR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgactacgtcttctgaggacgttttgctcagcgtcggctatgtgcgattcaagaaaggt
tacgggactttgtatgttatgaaccaaagattagcgtggatgttagaaaacagcgatact
gtggctgtgtcacacaaatatgcggatattaaaacacaaaaaatatcacccgtgggtaaa
ccaaaagtgcaacttcaagtggtactacatgatggcacatgttccactttccactttgtc
aaccctgcaggggcggaggagcaagctaaagaccgggaccaagtcaaaatgttacttcaa
aacttattaccaaagtttaagagacaaattgatggagaattggaaatgaaatccagattg
ctgtccctacatccgacattgaagcatttatatgaagacttagtgatatcaaaagtgatt
aatagtgaagaatattggaacacgcctactctcaaaacttatacagaatctaataatgtt
aagcaggaagcaggagtttcgggagctttccttgcagacatccaacctcagactgacggg
tgtaacggcctgaaatataacctcacccaagacattatagacgccatattcaaaacatac
ccggccgttagaaagaaacatgttgactatgtgccgaacaaaatgacagaagccgagttt
tggaccaagtttttccaatctcattattttcatagggaccgcatagcctcatcgtctagc
aaagatttgttcggagaatgtgccaaactggatgaccaagcaatcgcctcagctatgaaa
cacacaactttagatctcacagtggacctcccccaattcacagaaacgatacccctcctc
ccctccgaggacgacgcgcctccggaaaaagatagaggggatagtacctccatacataga
aacatgatcaagcgattcaaccaacactctattatggtgctcaaagctagtcataaaaca
aattctagtaataataataatagtagtagtaaaacgacaaataacaacaaagttgttgag
aatggagtcaaagaaccaaacggcgtgacggagaagagaacagcagaggaaagcagtaca
gaagcgccaaacaagaagcagaggatattagagaaattacattacgaagacttaaaagac
agcgggaacaatgaggatatgcaagaattgaaattgtctaaaatagaaagatatctacta
ggcccatcaactcagactcaccaatccaacacatacactaacccaccacctctatctgcg
ctcgcgtcgatttgtcaagcgtggagcagcgggcagcagtgcgcgcggcccgtgcgcgtg
tcggcgggcgcgtgcgtggccgcgctcggggagctcagccccggcggcgcgctcatgcgg
catcatcacgcggcctccatggcgcaactaattccaccggacgtaaagtctgagctacac
cgtatctacctgtcgggcggcgagctgctgcgcgagctgtggcgctgcttcccgcagccc
ggctccgccgacgcggaggacagcagcgcgcgcgccgagaagttctacgaggccttgctc
aggtttaggaatgttaaactgaggccgtttgaggagaaaatgctacgcgacttaacgcca
ctggctacaacactaacgcggcacatgaaccagatgatagacacggcgtgcgctaaatac
gcgatgtggcaacagaggcaggccaagctgcggtag
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