Thermosediminibacter oceani: Toce_0249
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Entry
Toce_0249 CDS
T01289
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
toc
Thermosediminibacter oceani
Pathway
toc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
toc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Toce_0249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
toc03400
]
Toce_0249
Enzymes [BR:
toc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Toce_0249
DNA repair and recombination proteins [BR:
toc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Toce_0249
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADL07035
UniProt:
D9S0A7
LinkDB
All DBs
Position
complement(246129..247055)
Genome browser
AA seq
308 aa
AA seq
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MIKPGIPFIPMEPLPHPKPFDDEKYGFQIKWDGTRIVAHLSGGVELFNRKMKRRTAQYPE
VAGTLSDVLGDSDAVLDGEMITLIGGKPSFQQLMRRDWATDPGTINYLASRIPVTYVVFD
ILYLNGKSLIDLPFSRRYHILKSTLRSSDPVVVTDTFPGRGIALYEIARERGLEGIVAKR
LDSVYQIGKKSDKWLKIKNRREVTALVGGFLAEGKSVRSLFLGQLVEGELIYIGRASSGL
GAETSRVLYDLLSKSAKESCPFANPPQIERREKPVWVSPSVAVEVEFLDYTDEGYLRHPV
IRRVEFGS
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgataaagcccgggatacccttcatacccatggagccgctgcctcacccgaagcccttc
gacgacgaaaaatacggcttccagataaagtgggacggcaccaggatagtagcccacttg
agcggcggcgtggagcttttcaaccggaaaatgaaaaggcgcaccgcccagtacccggag
gtggcaggaacgctttcggatgtcctcggggactccgacgcggtactggatggagagatg
ataactttgatcggcggaaagcccagcttccagcagttgatgaggcgggactgggccacc
gacccgggcaccataaactatctggcctcaaggatacctgtaacctacgtggttttcgac
atcctttacttgaatggaaagagcctcatcgacctgccattttcccggcggtaccacata
ttaaagtccaccctgaggtcctcggacccggtggtggtgaccgataccttcccgggccgg
ggaatcgccctttatgagatcgccagggagaggggacttgaaggcatagtagccaaaagg
ctggacagcgtttaccagatcgggaaaaagagcgacaaatggctcaaaatcaaaaaccgc
cgcgaggtaaccgccctggtgggcggctttctggccgaaggaaaaagcgtgcgctccctg
tttctggggcagctcgtcgagggtgaactcatttatatcggcagggcgtccagcggactt
ggtgccgaaacgagcagggtcctatacgatttgctttcaaaatccgcaaaggagtcatgc
ccttttgccaacccgccgcaaatcgaaaggagggaaaagcccgtatgggtcagcccttcg
gtcgctgttgaagtggaatttctcgattataccgacgaaggttatctcaggcatccggta
ataaggcgggtggaattcgggtcatga
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