Tympanuchus pallidicinctus (lesser prairie-chicken): 128078040
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Entry
128078040 CDS
T08967
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tpai03009
]
128078040 (PDCD11)
Ribosome biogenesis [BR:
tpai03009
]
Eukaryotic type
90S particles
Other 90S particles
128078040 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1
Spt6_S1
TPR_14
TPR_19
Suf
TPR_15
TPR_12
TPR_16
DUF4435
Motif
Other DBs
NCBI-GeneID:
128078040
NCBI-ProteinID:
XP_052533808
LinkDB
All DBs
Position
Unknown
AA seq
1841 aa
AA seq
DB search
MASIEENFPRGGIQKKPTETTGKKPKPKFEQDNLFDIHHEEQTQKRKRSEGDHRKQKKFK
ADKKARAKDIAVSVEPLTIQELCEGMLLLGCIKEVTVFELVISLPNGLTGFVPVTQISDA
YSELLSKQVTQGELLEDLNSLSDLYSPGMLVRCAVTSVEKSADGRRSIKLSINPKNVNRG
LNASALTSGMLLSGFVSSVEDHGYLIDIGVRGTHAFLPHQKARSYIKAVKKGSDLKIGQS
LNCLIEEVKNEGRVVHLSADRSEVSASIATEQQNWTLSNLLPGLVVKARVQKVAPLGISL
TFLSSFTGIVDFMHVDPEKSTNYSPNQVVKACILSTHPTSKVVHLTLRQAFLHPGGSPNQ
LSNDRMGAVVEESTVKAFYKQFGAVFELDDGMLAFARLKHLSKTRKSFKPAAFKAGCKHK
CRIIDYSLMDEMCIVSLKHQIIEARFLRYQDIHTGDVMQGKVVSLKPIGMHVKVADGIKG
LVPSMHLADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLVQSKLPVLSSYED
AEPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLK
CEPQQGRLLLSFRLSSRPVPEGRTECTPKKKQEVKYQIGEMVDVKILKKNENGLEVSILE
DGDDVIAWLPRVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVMSAVQ
EEQVVRSFFEIQPGVLLTGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVV
GQTVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFSLLNQYFKEMEEIKNLLRRREES
GLAQSFCELVPGKELQLVVQDVTEDGSALFSGSCVRGWTVTATRYHLGGKKVVPGEKAKG
LVLHVDAIASKVHVSLREELLKKRAKQRLTKNSQHPAIVQHVAEEFAIVSLLDSGWLAAV
PIASHFNDTFRFDSEKMKVGQRIYATLKMVKANDLGVVLAVQDPTKKNIFVRDRKESETA
LEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASQILDEVPIHSFPTY
TLKAGQKVTARVIGGRDVNTHRYLPITHPHFTRSVPELSIRPSEIEGKVETVRDDTREKL
GPYNVGQTVTCFVRKYNILKNWLEVEVTPEIRGRVPRLLLSLNTKVLKHPEKNFKNGQAL
SATVTGTDATETNLFLSLTGIQSLEPGTNTVGVVAKMIPHIGLTITLPGGKTGKVSIFHL
SDKYTENPLSDFKIGKVVRCYILSNENGKIQLSLRQSRLNPKNSSKVEDAEITSIKDVKK
GQLLRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHCLYEKYLPEGKLLTAKVLD
VNKTENHVELSLLPEDTEMPSVLPESLGLPRYGAEEEKREEEKREEDNKEKKEKVKRKRK
QRRMNSESEQEAKPKKRKLSPADENDSGIEVYYREEEDGDQEGEAAEEKSKIKKCGEFPR
LQVSTGFTWDEDINAVEVPVLNQKEESSESEEEEENLQSKKQTKKEKELEKQKKEKELCK
LEAALMDPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTIC
FREEQEKLNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYANSEKYKQA
EELYHTMLRRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQL
EFRFGDPEHAKALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEVRDIFERVIHLNLAPKK
MKFFFKRYLDYEKKYGTTETVMAVKTAALEYVEAKSSLADT
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatagaagaaaactttcctcgagggggaatccagaagaagcccacagagaca
acaggaaaaaaaccaaaaccaaagtttgagcaggataacttgtttgatattcaccatgaa
gaacaaacacagaaaagaaaaaggagcgaaggggatcataggaagcagaaaaaattcaag
gcagacaaaaaagctcgtgctaaagacattgctgttagtgttgaaccactcacaattcag
gagctctgtgaggggatgctgctccttggttgtataaaagaggtaactgtctttgagctt
gtcatcagcttgcccaatggacttacgggatttgttccagtcacgcagatcagtgacgcc
tacagtgaattgttgagcaagcaagtgacccaaggggagctgctggaggatttgaattct
ctctcagacctgtactctccagggatgttggtcagatgcgctgtgaccagtgttgagaaa
agtgctgatggacgtcggagtatcaagttgtccatcaaccctaaaaatgtcaacaggggt
ctgaatgcatcagcactaacatcaggcatgctgctctctggatttgtgtctagtgtagaa
gaccatggctacctcattgatattggagtcagagggactcatgctttccttcctcatcag
aaagcccgaagttacatcaaagcagtcaagaaagggtctgacttgaaaatagggcagagc
ctgaactgcctcattgaggaagtaaagaatgagggaagagtggtccatttgtctgctgat
cgatcagaggtttctgcatccattgcaacagagcaacagaactggacactctctaatcta
ctgccagggctggtggtaaaagctcgagtgcagaaggtggctccactgggtatcagtctg
acctttctgtcttccttcactggcattgtggatttcatgcatgtggacccagagaaatcc
acaaattattctcctaatcaagtggtgaaggcctgcatcctctctacccaccccacctcc
aaggtggtgcatcttactctgcggcaggccttcctccaccctggaggatccccaaaccag
ctctccaatgatcgcatgggggccgtagtggaagagtctacagtgaaggctttctacaag
cagtttggtgctgtctttgagcttgatgatggcatgcttgcatttgcacgattgaaacat
ctatcaaaaaccagaaaatcttttaaacctgcagcgttcaaggctggatgtaagcataag
tgtcggatcattgactacagcctgatggatgagatgtgcatagtatctctgaagcatcaa
attattgaagctcgtttcctgcgataccaagatattcacacgggggatgtcatgcagggc
aaagtagtgtctctgaaacccattgggatgcatgtgaaagttgctgatggcattaaaggg
cttgtgccatccatgcatcttgctgatgtgatcctgaagcagcctgagaagaagtacaat
gtaggagatgaagtcagatgtcgggtattagagtgcaatcctgcagaaaagaagctattc
cttactttaaagaaaactcttgtgcaatcaaagcttccagtcctctccagttatgaagat
gcagaaccaggtctgatcacacatggctttgtggtgtgtgcaagggaatttggctgcatt
gtgaagttctacaatgatgtcaaaggtctggtacccaagaatgagctgagctcagagccc
atatcttgtccagataaagtcttccatgatggccaggttgttaaagtaatggtcttaaaa
tgtgagccccagcagggaagactcttgctgtccttcaggttatcaagcaggcctgttcct
gaaggcagaactgagtgtactccaaagaagaaacaggaagtgaaatatcaaataggagag
atggttgatgtgaaaatcttgaagaagaatgagaatgggctcgaggtttctatcttagaa
gatggagatgatgtgatagcctggcttcctagagtgcacctctctgacttcgttgctaac
tctaagctcctgtggcattgccttcaagagggagatgtcttgcccagagttatgtgcctg
agtgacaagggggaccgtattatcttgtgcaggaagtctgcagtgatgtctgctgtacag
gaagagcaagttgtgaggagtttctttgaaatccagcctggggtgctgctgactggttat
gtgaggaaggttatgcccttcggagtgtttgtggagttcccctttggtgtgacaggactg
gcacctaaagtaagcatgagtgacaagtttgtgacagacaccaaggaccactttgtggtg
ggacagactgtaattgcaaaggtgatgagcattgatgaggagaagcagcgtgtgctcctc
aatctgaaggtgtcggagtgcagctctggtgattcagctgcagagagcttttctctgctg
aatcaatacttcaaggagatggaggaaatcaagaacttgttgaggagaagagaggagtct
ggcttggcccagagcttttgtgagctggtgcctgggaaggagctgcagctggttgtgcag
gatgtgacagaggacggctcagcactcttcagtggcagctgtgtcagaggctggactgta
acagctactcgctaccacttgggaggcaaaaaagtcgttcctggtgagaaagcaaagggg
ctggttcttcatgtggatgccatcgcatccaaggtgcacgtttctcttcgagaagaactc
ttaaaaaaaagagccaagcaacggctcacaaagaactcccagcaccctgccatcgtgcag
cacgtcgcagaagagtttgccatcgtgtctctgttggactcaggctggctggcagctgtc
cccatagcctctcacttcaatgataccttccgctttgactcagaaaaaatgaaggtggga
cagagaatctatgcaaccttaaaaatggtgaaggcaaacgatcttggagttgtgttagca
gtacaagacccaacgaagaagaatatttttgtaagggaccggaaagagtctgagacagcc
ttagaggagacacttgctgctgctgtgaaacactctctttccctgggtgatatcgttact
ggtactgttaaatctgtcaaaccaacccatgtcacagttgctattgatgacaaattgaca
ggttcaatccatgcatcccagattctggatgaagtgcccatacactcttttccaacgtac
actttgaaagctggacagaaggtgactgcccgggtcattggaggcagagatgtgaacact
cacaggtacctgcccatcacccatccacacttcacacggtctgttccagagctcagcatt
cgaccaagtgaaatagaagggaaagttgaaacagtgagagatgacacccgtgagaaactt
ggaccctacaacgttgggcagacagtcacctgttttgtgaggaagtataatatcctgaaa
aattggctggaggtagaagtgacccctgagattcgaggaagagttcctcgtctgctgctg
tctctgaacaccaaggtcttaaaacatccagaaaagaacttcaaaaatggccaggcgtta
tctgctacagtgactggaacagatgccaccgaaacaaacctcttcttgtcactcacagga
attcagtcactggaaccaggtaccaacactgtaggtgtggtagcaaaaatgattcctcac
attggtttgaccatcactctgccaggtgggaagactggcaaagtcagtatctttcaccta
agcgataaatacacagagaatcctctgagtgacttcaaaattggcaaagttgtcagatgt
tacatcctctccaatgagaatggcaaaatccagttatctcttcggcagtccagattaaac
cccaagaacagcagcaaagtggaggatgctgaaataacaagtattaaggatgttaaaaaa
ggccagctattgagaggctatgtcaaatcagttactccgtcaggtgtattctttggcttg
tctgcttctcttctgggccgaattcttttccagaatgtttccccttactttgtacagaaa
cactgcttatatgagaaatacctgccagagggaaagctgctcactgccaaggtccttgat
gtaaataaaaccgaaaatcatgttgagctctctctcctgcctgaggacactgagatgcca
agcgtcctgcctgaatccctaggcttaccacgctatggtgcagaggaagagaaaagagag
gaagagaaaagagaagaagataacaaggagaagaaggaaaaggttaagaggaagagaaaa
cagagaagaatgaattctgagagtgagcaggaagcaaagccaaaaaaaaggaagctttct
ccagcagatgaaaatgacagtggaattgaagtgtattatcgggaagaagaggatggtgac
caggagggagaggcagctgaggagaaatctaagataaagaaatgtggtgaatttcccagg
ctgcaagtttccacaggcttcacctgggatgaggacataaatgcagtggaagtgcctgta
ctgaatcagaaggaagagagctcagagagtgaggaggaggaggaaaatctgcagtctaag
aaacaaacaaagaaggagaaggagctggagaagcagaagaaggagaaagagctatgcaaa
ttagaggcagccctgatggacccgagtcgtcagccccaatcagcagatgattttgaccgt
ctggtgctcagtagtcccaacagctccatcctctggctgcagtacatggctttccacctc
caggctactgagattgagaaggccagagctgtggcagagagagcacttaaaacaatctgt
ttcagggaagaacaagagaagctgaatgtctgggttgctcttctaaacttggagaacatg
tatggcactgaggagacactgatgaaggtctttgagagagctgttcagtacaatgaacct
ctgaaagtcttccagcatctgtgtgatatctatgccaattctgagaagtacaagcaagca
gaagaattgtatcacacaatgctgaggcgtttccgtcaggaaaaatcagtgtggctgaag
tatgcctctttcctcttgaagcaaggccagactgaagctacacacaggcttttggagcgt
gctctcaaggctctgcccaccaaagaacatgtggatgtcatttcaaggtttgcacagttg
gagttccgttttggtgacccagaacatgccaaggccctttttgagagcaccctcaacagc
tacccaaagcgaacagatatctggtccatctacatggacatcatgatcaaacaaggcagc
cagaaggaagtacgggacatctttgagagggtaatacacctgaacttagcaccaaagaag
atgaaattcttctttaagcgctacctggattatgaaaagaaatatggtacaacagaaact
gtcatggctgttaagacagcagcactggagtatgtagaggccaagagttccctcgctgac
acctaa
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