Tympanuchus pallidicinctus (lesser prairie-chicken): 128088266
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Entry
128088266 CDS
T08967
Symbol
COL16A1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
128088266
NCBI-ProteinID:
XP_052554579
LinkDB
All DBs
Position
Unknown
AA seq
1622 aa
AA seq
DB search
MRGLWAVVVVGLISACDGTEMPAEEGTLCPQLWDEDLVGNKYENVTGFNLIKRFDLTKIS
SVKKVRGPRGAVLLRLGAVPLVQPTRQVFPHGLPSEFTLILTLLLKKNSTGEHWYLFQVT
DRHGYPQLSLSVHGPEKSLEFQARAPGSTFVSTVFTGKAVSSLFDGRWHKVLLAVQSRAV
SLHVDCGSISSKPLAPRRALTPEGNAFLGLDAVRGTPVRFDLQQAHIYCNAELARHEGCC
EISASGCQPEAPKTRRQAELMQSSNLIEISPQPQGRVFTRCFCLEEPLGSEPEREKSSLK
GDYVEKGYKRMSNEECPPCPPQTAPTNVTLGPPGPKGLKGERGLPGTHGTKGEKGERGAD
CVRTDPVGPVQCAEGPRGEQGQRGERGLPGVAGADGQKGQKGEKGDGGLQGKPGRPGRDG
RPGEICVVGPKGQKGDPGLVGPEGLAGEPGPPGKPGAPGIGFPGKPGDPGGPPGPKGEKG
SSGAPGPGGSPGTPGPRGVLGPKGDKGEPCQPCPALPTGMLSTAGLPGKPGPRGEPGTPG
KDGVSDRPGPAGPKGDRGDPGINGIKGEKGDSCLSCDSRVLAALLREPPEGRESELGSLQ
DKAILPGLAGIKGEKGAGGQEGPAGRPGLPGSKGDPGVQGLKGEKGEPCGQCPSAPQALE
GAATVMAVPGAPGPQGRDGAPGRAGKPGDAGQKGQKGDVGSPGDPGTPGTDGLPGLSGEP
GIRGPAGPKGEKGDACESCPTLQGRFSDVIGIPGKPGAKGDQGAPGIGQPGRAGKPGLPG
IRGPAGLKGLQGEPGPPGIGKPGPQGEPGSAGEPGTPGPPGPQGPPGMAAEKGAKGSPGL
KGAVGPPGPPGISVTGPPGPEGQRGLPGVPGSSGMPGEKGARGEKGDPGECVCPPSPRQD
PNHTGMPGAPGLWTGTSWQPQPGPQGPPGAPGPPGPPGAPGRQGVPGHNGLPGLPGPAGD
LGPLAVMAERNIEVLKNICGDCAQLQAAFEAPRSFKGEKGDQGMPGAPGNEGCARCFAQF
PRAEEARGDSPDTDCGEPGLPGAPGVPGERGEQGLPGQRGPPGPPGPIGPPGFPGTPGAP
GLPGLQGERGPAGLAGAKGEPGPPGQPGYPGATGPPGLPGIKGERGYMGPPGEKGELGPP
GLDGLPGAMGPAGPRGERGLPGGAGEKGDQGFQGQPGFPGPPGPPGFPGKVGPAGPPGPA
AEKGSEGMRGPTGMPGPPGPPGPPGVQGPAGLEGLDGKDGKPGLRGDPGPPGPPGMMGPP
GFKGKPGHPGLPGPKGDCGKPGPPGSTGRPGAEGDPGPMGPQGRQGPPGLIGPPGSPGQP
GPAGLAGVGMKGERGSAGDRGLPGMPGQPGPPGHPGPPGEQGPDGPVGKEGPPGKPGTAG
PAGQKGEAGSPGMRGYPGEKGRAGSPGGPGKSGSMGPIGLRGPAGERGPPGSPGPAGSPG
LPGPPGMMGDVVNYDEIKRFIQQEINKMFDERMAYYTSRMHFPVEMVAAPGRPGPPGKDG
LPGRPGPPGSPGMPGQIGREGRQGVPGMRGEPGAKGEKGEKGMGLMGDSGPPGPPGPQGP
PGYGKMGPPGPVGQQGIPGIPGPPGATGPPGKTGHCSPAECMGALPMEQPLFQPKNAKGP
FG
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atgaggggtctctgggccgtcgtcgtggtggggctcatcagcgcctgcgatgggacggag
atgccagcagaagaagggacgctgtgcccgcagctttgggacgaggatctggttgggaac
aagtatgagaacgtgacgggcttcaacctcattaagcgcttcgacctgacgaagatctcc
tccgtcaagaaagtgcgcggcccacggggcgcggtgctgctgcggctgggggccgtgccg
ctggtgcagcccacaaggcaggtgttcccccacgggctgccctctgagttcaccctcatc
ctcaccttgctgctgaagaagaacagcacgggggagcactggtacctcttccaggtcacc
gaccgccacggctacccccagctctccctgtccgtgcacggccctgagaagagcctggag
ttccaagccagggcgccaggatccacatttgtcagcaccgtctttacggggaaggccgtc
tcgtcgctgtttgacgggcggtggcacaaagtgctgctggctgtgcagagccgcgctgtg
tccctgcatgtggactgcggctccatctcctccaaaccgctggcgccgcggcgggcgctg
acccctgagggcaatgccttcctggggctggatgccgtgcgcgggaccccggtgcggttc
gacctgcagcaggcgcacatctactgcaacgcagagctggcccggcacgagggatgctgc
gagatctcagccagcgggtgccaacctgaagcgcccaagacgcggcgtcaggcggagctg
atgcagagcagcaacctcatcgagatctccccgcagccgcagggccgggtgttcacacgc
tgcttctgcctggaggagccgctgggctcggagccagagagagagaagagcagcctgaag
ggagattatgtggagaagggctacaagaggatgtccaacgaggagtgcccgccctgccca
ccgcagacggctccaacgaatgtgacgctcggtcccccaggacccaagggcttgaaggga
gagcgcggcctgcccggcacccacggcaccaagggggagaaaggcgagcgtggtgctgac
tgcgtgcgcacagaccccgttggccctgtgcagtgcgctgaggggccgcggggcgagcag
gggcagcgtggagagcgggggctgccaggggtggccggtgccgatgggcagaagggccag
aagggtgagaagggtgacgggggactccagggcaagccaggccgcccaggtcgtgatggc
cggcctggagagatctgtgtggtgggtcccaagggccagaagggggacccgggcctcgtg
ggacctgaggggctggcaggagagccggggccaccagggaaaccgggtgcaccagggatc
ggctttccggggaagccgggtgatcctggtggccccccaggtccaaagggagaaaagggc
agctcaggagctcctggacccggcggatctcctgggacacccggaccacgtggtgtcctg
gggcccaaaggagacaagggtgagccgtgccagccgtgccccgctctgcccacagggatg
ctcagcactgcggggcttcctggaaagcctggacccaggggggagcccgggactcctggc
aaggatggagtgtcggacagacccggccctgcaggacccaaaggggacaggggagaccct
ggcatcaatgggatcaaaggagagaagggggactcctgcctgtcctgtgacagccgtgtc
ctcgccgcgctgctgcgggagccccccgaggggcgtgagagtgaactgggatcactgcag
gacaaagcaatcctccctgggctggctggcatcaaaggcgagaagggagctggtggccag
gagggacctgcaggcagaccggggctccctgggagcaagggtgatccaggcgtgcagggg
ctcaaaggggagaagggtgagccgtgtgggcagtgtccctcagctccacaggcactggaa
ggggcagcaacagtgatggctgtgcccggggcaccaggaccgcagggcagggatggtgct
cccggaagagcgggcaagcctggtgatgctggccagaaagggcagaagggggacgtgggc
agccctggggacccaggcacgccgggcacagatggactgccagggctgtcgggtgagccg
ggcatcaggggtccggccggccccaaaggcgagaagggagacgcctgcgaatcctgcccc
acgctgcaggggcgcttctcagacgtgatcggcatcccgggaaaacccggtgccaaaggg
gaccaaggagctccgggcatcgggcagccgggcagagccgggaagccggggctgccaggg
atccgaggtcccgctgggctgaaagggctgcagggtgagccaggaccaccaggcattggc
aagccgggaccacagggagagcccgggagcgctggagagcctgggacccccggaccccca
gggccccagggacctccaggaatggcagcagagaaaggagccaagggatctccagggctc
aaaggtgctgtaggcccccccgggccaccagggatcagcgtcactgggccaccaggcccc
gaagggcagcgggggctccccggggtgcctggctccagtgggatgccgggagagaagggt
gcccggggcgagaagggagaccctggggaatgtgtgtgccctcccagcccacgccaggac
cccaaccacactgggatgccgggagctccaggactctggactgggacatcctggcagccc
cagccgggtccccagggtcctcctggagcgcctggtccccctggtcctcctggtgccccg
ggccgccagggggtcccaggacacaacggattgccagggctgcccggaccagcaggagac
ctgggaccattggccgtcatggctgagaggaacatcgaggtgctgaagaacatctgtggg
gactgcgcacagctgcaggcggcctttgaagcacccagaagcttcaagggggaaaaagga
gaccaaggcatgccaggagcccccggcaacgagggctgtgctcgttgctttgcccagttc
ccaagagctgaggaggctcggggtgacagcccagacacagactgcggtgaacctgggctc
cccggtgccccaggtgtcccgggtgagagaggcgagcagggcttaccaggacagcgggga
cccccagggccacccgggcccatcggccccccaggctttcctggcacgcctggcgcacct
ggactgcccggtctccagggggagcgaggccctgctgggctggctggagccaaaggggag
ccgggacccccaggacagcctggctatcccggtgccacaggccctcctggccttcctggc
atcaaaggtgaacgaggctacatgggcccaccgggggagaaaggggaactgggcccccca
ggcttggatggtctccccggtgccatggggccagcgggaccaaggggtgagcgcgggctc
ccaggcggtgctggtgagaagggcgatcagggtttccagggccagcccggcttcccaggg
ccacctggtccccccggcttcccagggaaggttggccctgctgggccaccgggacctgcg
gcagagaagggcagcgagggcatgcgggggcccacagggatgccagggccccctggaccc
cctggacctccaggcgttcagggccctgctggcttggaaggactggatggcaaggatggc
aagccggggctgcggggtgaccccggcccccctgggccaccaggaatgatgggtcctccg
ggcttcaaaggaaaaccggggcacccagggctgcctggaccaaagggtgactgcggcaaa
cctggtcctcccgggagcacgggtcgtcccggggcggagggtgaccccggccccatggga
ccccaaggccggcagggacccccgggactcattggcccccctggcagcccggggcagccg
ggtcctgctggtctcgctggagtggggatgaagggtgagcgtggctcagcgggggaccga
ggtctgccaggaatgccaggacagccagggccaccaggacacccagggccaccgggggag
caggggccggatggacccgttggtaaagagggccccccaggaaagcctggcactgcagga
cctgctggccagaagggtgaagccgggtcccctggaatgcgagggtatcctggggagaag
ggccgtgctggatcacctggggggccagggaagagtggctccatgggccccatagggctg
cggggtcctgcaggagagaggggtccccccggctcaccaggacctgcgggcagccccggg
ctgccgggaccccctgggatgatgggtgacgtggtgaattacgatgagatcaaaaggttc
atccagcaggagattaacaagatgtttgatgagcgcatggcatactacacctcacggatg
cacttcccggtggagatggtggcagccccaggcagaccaggtcccccgggcaaggatggg
ctgcctggccggccgggacccccaggatccccagggatgccagggcagattggcagagag
gggcggcagggtgtgccaggcatgcggggggagccgggtgccaaaggagagaaaggggag
aagggcatggggctgatgggggacagtggcccaccaggacccccaggtccccaagggcca
ccaggctatgggaagatgggccctccaggccccgtggggcagcagggcatccctggcatc
cccggtcccccaggtgccacggggccgccgggcaaaacggggcactgcagccctgctgag
tgcatgggcgctctgcccatggagcagccactcttccagcccaagaatgccaagggtcct
ttcggctga
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