KEGG   Thrips palmi (melon thrips): 117646498
Entry
117646498         CDS       T08251                                 
Name
(RefSeq) DNA ligase 3 isoform X1
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
tpal  Thrips palmi (melon thrips)
Pathway
tpal03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:tpal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    117646498
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tpal03400]
    117646498
Enzymes [BR:tpal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     117646498
DNA repair and recombination proteins [BR:tpal03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     117646498
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C zf-PARP LIG3_BRCT BRCT_2 RNA_ligase DUF3598_C
Other DBs
NCBI-GeneID: 117646498
NCBI-ProteinID: XP_034243387
UniProt: A0A6P8Z8R5
LinkDB
Position
Unknown
AA seq 909 aa
MSDELPGPVAPPERPFAADRPKDNRAKKAKCKRCKETTEPNKLRIGRYVANAFNASGGWT
KAWFHPACMWEAFAKQRATTRKIENPAEDIDGWEDLLQEDMDEIVAYLRSTGVKVASPKA
TRQPGDAATPKQKAKRKGKAEAKAEPSPPAAPPSPPRPPPPSKDDYFRAFRKLCVQLSDE
PSYLAKTALVAKLFKEGTDGGGFRGNLDTWVRLLLPMVQPRVYNLQSKQLVKLFSKILQT
SEEAMLEDLKHGDVAHTISSAFEESKAVKAVSKSNILIAEVDEFLEKLSGMTREEEQGHH
FKQLTQKCTPNDLKMVIRLIKHDLRINAGPKHILAAVHPDAYAAYQTCRDLRAVVQKAAS
DAGPGAAGSSSGASLDAGGSSSGANLSIAINIMTPVLPMLAEACKSVEQAMKKCPNGMYS
EIKYDGERVQVHKKGDEFKYFSRALKPVMAHKVNHFKEFIPDAFPSGEDLILDSEILLVD
NRTGKPLPFGSLGVHKQTGYQDANVCLFVFDCMYYNGESLLHMSMKRRRKILEKVMVEIP
NRVVLSEQEEIHVPADLTAMMEKVFRLGLEGLVLKNLEGPYEPGKRHWLKVKKDYLFGGA
MADTADLVVLGAFYGTGQKGGMKSIFLMGCYDPSYKRWVTVTKVHGGHDDATLARLQTEL
KMVEINKDPGKIPSWLKANKPMFPDFVTVDPKESQVWEITGAEFTQTEVHTADGISVRFP
RVTRIRDDKGWEQATSLPELRELYKKSKETSTFSLSAAASSAASSPTKTDSPTRRGKRGA
DAAGSPRGSPAKRGAAAASTDDSDSHKRARAKTGPAKPLPDVFLGVQLRMPRGLTEEEVY
HFKRYFVGYGGKLLDRRSKETPTHVLQCPDADGASENTPRNGDAVVVDVKWLWDSVKRQR
LLATEGYTL
NT seq 2730 nt   +upstreamnt  +downstreamnt
atgtccgacgagctgcccggccccgtcgcgccgccggagcgccccttcgcggccgaccgg
cccaaggacaaccgcgccaagaaggccaagtgcaagcgctgcaaggagacgacggagccc
aacaagctgcgcatcgggcgctacgtggccaacgccttcaacgcgtccggcggctggacc
aaggcgtggttccacccggcctgcatgtgggaggccttcgccaagcagcgcgccaccacc
aggaagatcgagaaccccgccgaggacatcgacggctgggaggacctgctgcaggaggac
atggacgagatcgtggcgtacctgcgcagcacgggcgtcaaggtggcgtcgcccaaggcg
acgcggcagcccggcgacgcggccacccccaagcagaaggccaagaggaagggcaaggcg
gaggccaaggcggagccctcgccgcccgccgcgccgccatcgccgccccggccgccgccg
cccagcaaggacgactacttcagggccttccgcaagctgtgcgtgcagctgagcgacgag
cccagctacctggccaagacggcgctcgtcgccaagctgttcaaggagggcaccgacggc
ggcggcttccgagggaacctggacacgtgggtgcgcctgctgctgcccatggtgcagccg
cgcgtctacaacctgcagagcaagcagctggtgaagctgttcagcaagatcctccaaacc
agcgaggaggccatgctggaggacctgaagcacggcgacgtggcccacaccattagctcg
gccttcgaggaatccaaggccgtcaaggccgtgtccaagagcaacatcttgatcgccgag
gtggacgagttcctggaaaagctgtccggcatgaccagggaggaggagcagggccaccac
ttcaagcagctcacgcaaaagtgcacgcccaacgacctcaagatggtgatccgcctcatc
aagcacgacctacgcatcaacgccggccccaagcacatcctcgccgccgtgcaccccgac
gcctacgccgcctaccagacatgcagggacctccgcgccgtggtccagaaggccgccagc
gacgccggcccgggggctgccggttcttccagtggcgcgagcctcgatgccggcggcagc
agcagtggcgccaacctcagcatcgccatcaacatcatgacacccgtgctgcccatgctg
gccgaggcgtgcaagtcggtggagcaggcgatgaagaagtgccccaacggcatgtactcc
gagatcaagtacgacggcgagcgcgtgcaggtgcacaagaagggcgacgagttcaagtac
ttctcgcgcgcgctcaagcccgtcatggcccacaaggtgaaccacttcaaggagttcatc
ccggacgcgttccccagcggcgaggacctgatcctggacagcgagatcctcctggtggac
aacaggacggggaagccgctgcccttcgggtccttgggcgtgcacaagcaaacgggttac
caggacgccaacgtgtgtctgttcgtgttcgattgcatgtactacaacggggagtccctt
ttgcacatgagcatgaagcggagacgaaagatcctggagaaggtgatggtggagattccg
aaccgcgtcgtcctctcggagcaggaggagatccacgtccccgccgacctgaccgccatg
atggagaaggtgttccgcctcggcctcgaggggctggtgctcaagaacctggaggggccc
tacgagcccggcaagcggcactggctcaaggtgaagaaggactatctgttcggcggcgcc
atggcggacacggctgacctcgtcgtcctgggcgcgttctacggcaccggccagaagggc
ggcatgaagtccatcttcctgatggggtgctacgacccgagttacaagcggtgggtgacc
gtcaccaaggtgcacggcggccacgacgacgccaccctggccaggctgcagaccgagctc
aagatggtggagatcaacaaggaccccggcaagatcccttcctggctcaaggccaacaag
cccatgttccccgacttcgtgaccgtggaccccaaggagagccaggtgtgggagatcacg
ggcgccgagttcacgcagacggaggtgcacacggcggacggcatctcggtgcgcttcccg
cgggtgacgcgcatccgcgacgacaagggctgggagcaggccacctcgctgccggagctc
agggagctgtacaagaagtccaaggagacgtccacgttctcgctgtccgcggcggccagc
tcggcggcgtcctcgccgactaagacggactcgcccacgcgtcgcggcaagagaggcgcg
gacgctgcaggctcgccgagggggtcgcccgccaagcgcggggcggccgcggcctcgacg
gacgactccgactcccacaaacgagccagagctaaaacgggcccggccaagccgctgcct
gacgtgttcctgggcgtgcagctccggatgccgcgcggactcaccgaagaggaggtgtac
cacttcaagcgctacttcgtcgggtacggaggcaaactgctggaccgccgctccaaggag
acgcccacccacgtgctgcagtgcccggacgccgacggcgcctccgagaacactcctcgg
aacggggacgccgtggtcgtggacgtcaagtggctttgggactccgtgaagagacagcgg
ctcctggccacggaaggctacacactgtag

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