Trifolium pratense (red clover): 123888495
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Entry
123888495 CDS
T08949
Name
(RefSeq) DNA ligase 6 isoform X1
Organism
tpra
Trifolium pratense (red clover)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DRMBL
DNA_ligase_A_C
RMMBL
UBA_4
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
123888495
NCBI-ProteinID:
XP_045793528
LinkDB
All DBs
Position
LG6:41451242..41468116
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AA seq
1397 aa
AA seq
DB search
MASKSKSQTLDLNSTQLFTTALQSLNLPKPSLPLPPLPSSSIPHSNLIPNTRFLIDAFRY
SGDFSVSYFLSHFHSDHYAGLTSSWSNGIIFCSPITAHLLINILNIPSSFIYPLNLHQSV
TIDGSVITLIDANHCPGAVQFLFQVPFMDQSLRYVHTGDFRFSNEMMLDSALGCFIGADA
VFLDTTYCHPKFVFPTQDESVNYVVDVVNQCDGDDVLFLVATYVVGKEKILLEIAKRFGK
KVHVDARKMEVLRALGYGESGQFTEDSLETNIHVVGWNVLGETWPYFRPNFVKMKEIMTE
RGYSKVVGFVPTGWTYEVKRDKFAVRSKDSCRIHLVPYSEHSNYDELREYVKFLKPKSVV
PTVGLDVEKSDSKHVDKMRKYFAGLVDETANKKEFLRGFKQCDSSEVGLEAGKDVSDDLE
PGKSIEKEVKPSDAGEDKNINPDVAVSVSSCMGETFIEDPTLLNDEEKEKVIQELSCCLP
TWVTRSQMLDLISISGSNIVEAVSNFFERETEFHEQVNSAQTSVPTPRCCSSNDTSTSPI
SKSNLNDTNSTLKKCDIFPSQDSKMVNLRPPLRNQISPSKRKRSSETKPNKKGKVKVQAK
SESSGSKQATITKFFSKAMPVMPGDTQSDQLGSKPDESPIVEELLPTDAGNLYKQEIDQF
MQIINGDESLKKQVITIIENTKGDINKALDIYYCNGCNLGGKEIAVQGECKIDRPLENKC
VSQELKVIPDISMHRMLKDNVDSTHVSLPSEKYNPKNHACWRDGEPAPYLHLARTFNLLE
DEKGKIKATSILCNMFRSLLALSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTTALEE
ACGTNRLKLKEMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDIYSALRKISLQTGNGST
LRKKGIIVHLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALAHAVVMNSRPTVCQEGK
AENLKAALQVLSAEVVEAYNILPNLDIIVSSLMNKGIEFSVSSLSMVPGIPIKPMLAKIT
NGIPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSVHVFSRNGDESTSRFPDLIDMIKES
CKPVASTFIIDAEVVAIDRKNGYRIMSFQELSSRARGGKDTLVTKESIKVGICVFVFDIM
FANGEQLLGFPLRQRRKYLKDLFYDERPGYFEYAKETTIEADDAYLTCEATLTRINTFLE
DALRSSCEGIMVKSLDIDSGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKA
GWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKELFSEDKVLSKKPPYYQTGETPD
MWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISSVSDRNPEECSTAADI
VEMFQLQTRKMDVTTEG
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaaatcgaaatcccaaaccctagacttaaactccacccaactattcaccacc
gctcttcaatccctcaacctccctaaaccctctctcccactcccaccactcccttcttcc
tcaatccctcactccaatctcatccccaacacccgcttcctcatcgacgcatttcgctac
tccggcgacttctccgtctcctatttcctctcccatttccactccgatcactacgccggt
ctcacctcctcctggtccaacggcatcatcttctgttccccaatcaccgcccatctcctc
atcaacatcctcaacatcccttcctcattcatctaccctctcaatcttcaccaatctgtt
acaatcgatggatctgttatcactctcattgacgccaatcactgtcctggcgcagttcag
ttcctttttcaggttccgtttatggatcaatccttgaggtatgttcatactggtgatttt
cggttttcgaatgaaatgatgttggattctgcacttggttgttttattggtgctgatgct
gtgtttttggatactacttattgtcatcctaaatttgtttttcctacgcaagatgagtcg
gttaattatgttgttgatgttgtgaatcagtgtgatggtgatgatgttttgtttcttgtt
gctacttatgttgttggtaaggagaagattttgcttgagattgctaagaggtttggaaag
aaggtgcatgttgatgctaggaaaatggaggttttgagggcgcttgggtacggagagagt
ggtcagtttactgaggattctttagagactaatattcatgttgttggatggaatgtgttg
ggggagacttggccttattttaggcctaattttgttaagatgaaggagattatgactgag
agagggtactctaaggttgtgggttttgtgcctactggatggacttatgaagtcaagcgt
gacaagtttgcggttagatccaaggattcgtgtcggattcatcttgtgccgtatagcgag
cattcgaactatgatgagcttagggaatatgtgaagtttttgaaaccgaagagtgttgtt
ccgactgtgggtttagatgttgagaagagtgatagtaaacatgttgacaaaatgaggaag
tattttgctgggttggttgatgagacggccaacaagaaagagtttttaaggggttttaag
cagtgtgactccagtgaagttggtcttgaagccgggaaggatgttagtgatgatctggaa
ccagggaagagcatcgagaaagaagtgaagccatctgatgcgggagaggataaaaatatt
aatccggatgttgctgtgagtgtgtcatcttgtatgggagaaactttcatagaagatcct
acattgctaaatgatgaagaaaaagagaaagtcattcaagaactgagttgttgtttgcct
acatgggtcacccgaagccagatgttagatcttatcagcatctctgggagcaatatcgtt
gaagctgtttctaatttctttgaacgtgaaactgaatttcatgagcaagtaaattcggct
caaacttcagttccaacacccaggtgttgctcatcgaatgacaccagtaccagtcccatt
tcaaagtcaaacctcaacgatacaaacagcactttaaaaaaatgcgacatttttccaagt
caagactctaaaatggttaacctaaggcctccattacgaaatcagatttccccttccaaa
agaaagaggagtagtgaaactaagccaaacaagaaaggcaaagtcaaagtccaagcaaaa
tcagaatcaagtggttcaaagcaggcaacaataacaaaattcttcagcaaagcaatgcct
gtgatgcctggtgatacccaatctgatcaacttggatcaaagcccgatgaaagccccata
gttgaagaattattgccaactgatgctggaaacttgtataagcaagagattgatcagttt
atgcaaataataaatggggacgagtcattaaagaagcaggtaattactataattgagaac
acaaaaggagatatcaataaggcattggatatatattactgtaatggttgcaatcttggt
ggaaaagaaatagcagttcaaggggagtgcaaaattgacagacctttagagaataaatgt
gtgtcacaagagttaaaagttatacctgatatttctatgcatagaatgttaaaagataat
gtagattcaactcatgtgtctctaccatctgagaaatacaaccccaagaaccatgcgtgt
tggagagatggagaacctgcaccatatttacatcttgcacgaaccttcaacctgcttgag
gatgagaaaggaaagataaaagctacttcaatactatgcaacatgttcagaagtttgtta
gccttgtctccagaagacgtgcttcctgctgtgtatctatgtacaaacaaaattgctgca
gaccatgaaaatgtggaactaaatattggtggaagtttagtcactacagcactcgaagag
gcatgcgggacaaatcgattgaaattaaaggagatgtataataaacttggcgaccttggt
gatgttgctcaagagtgtcgccaaacacagagattgctcgcaccacctacaccacttcta
attaaggatatttactctgcactacgaaagataagtttacaaacaggcaatggaagcaca
ttacgaaagaaaggcatcattgttcatctcatgcgttcctgccgtgaaaaggagataaaa
tttcttgttcggaccttggtcaggaacttgaggattggggcaatgcttagaactgttttg
cctgcattggctcatgctgttgttatgaattctcgccctactgtgtgtcaagaaggaaag
gcagaaaatttgaaagcagcgcttcaggtcctttctgcggaagttgtcgaagcatataac
atactgccaaacttggatatcatagtctcatctctcatgaacaaaggcattgagttttca
gtttcaagtttatcaatggttccaggaatcccaatcaagcctatgcttgcaaagatcacc
aatggcattccccaagcattgaagctatttcaaaataaagcatttacatgtgaatataag
tatgatggtcagcgagctcaaattcacaaattggttgatggatcagttcatgttttttca
agaaacggagatgaatcaacttcgagattccctgatctgattgacatgataaaggaatct
tgcaagcctgttgcatcaactttcataatcgatgcagaggttgttgctattgatagaaaa
aatggatataggattatgtctttccaggagctatcttcacgtgcgagaggaggcaaagat
actttagttactaaagagagcataaaggtgggcatttgtgtctttgtcttcgatatcatg
tttgcaaatggagaacagttactgggttttcctctccgccaaagacgaaagtatctgaag
gatttgttctatgatgaacgacctgggtattttgaatatgcaaaagaaacaactatcgaa
gcagatgatgcctacttaacatgtgaagccacattaactagaataaatactttccttgaa
gatgcactccgctcttcatgtgaaggaattatggtgaaatcgttggatattgattctggg
tattccccatcaaagcgttctgacaaatggttaaaggtcaagcgagattatgtggaaggc
ttaaatgatactcttgatttagtaccaattggtgcttggcatggaaatggaaggaaagct
ggatggtatagtccatttctcatggcatgtttcaatcctgaaactgaggagtatcaaagt
gtatgccgagtgatgtctgggttctcggactctttttacatagagatgaaagaactcttt
tctgaggacaaagtgttgtcaaaaaagccaccatattatcaaacaggagagacacctgac
atgtggttttgtccacaacttgtttgggaaataagaggtgcagacttcacagtatcccca
gttcatcatgctgccattggtttagttcatccatctcgaggcatctcaatcagatttcca
agatttattagcagcgtgtcagacagaaacccagaagaatgtagcacagctgccgatata
gttgaaatgtttcaattgcagactcggaagatggatgtcacaactgaaggttga
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