Trifolium pratense (red clover): 123913619
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Entry
123913619 CDS
T08949
Name
(RefSeq) uncharacterized protein LOC123913619
Organism
tpra
Trifolium pratense (red clover)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_1
RT_RNaseH_2
RT_RNaseH
RVT_3
rve
Retrotrans_gag
RNase_H
Integrase_H2C2
Gag_p24_C
DDE_Tnp_IS240
RdRP_1
Motif
Other DBs
NCBI-GeneID:
123913619
NCBI-ProteinID:
XP_045820380
LinkDB
All DBs
Position
LG3:27747579..27754810
Genome browser
AA seq
1902 aa
AA seq
DB search
MAGVNNHQIPEHVAENNAQPMDYAPYHPLDGQFASVTEDGQEGQDAHYEPYNPEEPQIPV
ATPPQATPAVAIPPGVPMQEMMAALVNAINRQSDLLLQQNQRYEQQNQRLEQQSRRIDAI
AESRVTAQARPARRSPTPVRSRTYSRSRSPPRHRSERRSSPRRNEAISRNSTPPRRHSPR
RDNPPRRQRNRSPEERDSHQGPLSRRIRELPLPVGLEKPPAMDTYDGSTDPDEHIENLEA
LLEYRNVRGSIKCKLFPTTLRKGAMAWYKSLAPGSIDSWSDLCARFRAHFTSSRRHPKTE
ATLEAIIQGENEPLRAYLERFNKAAVEVKVEESMKLYLLDRGLHPDSDFAKAVSIEEPKT
LDAFFEKAKKYIAYEEKQRAKDLRRPKSQEKTRNHEKDEAGTSRRGNEKQKEERIKDSKP
PRGKFTTYTPLNASRDRIFAEVSAADFKKAGIHFPRQQPMKANTDRTKFCRYHKSHGHVT
EDCVHLKDAIEILIQKGYARRYVQNDEQAQQQQQQPRREPQEVAMAIDVPEQENRGIVPQ
ALAISAPEIPLPSPGSDEGALMRHFNAHLNGSWENFPKALVITGGGLNKITLGSVKRKFE
ELENVCSVTPITVTKPEGGSDPLAFYKSEVPGGSPNYQIPLLVRARMANFDVHRILVDQG
SSCDVMYSGLFKTLQLSEKNLVPYVGPDLQGFNGSTTKPWGYVDLIVTFGEEKAMKSVRT
QFMVVDCPSLYNCIIGRTTLAELFAVSSTVHLKLKYYTLDDQVATINGDIAAARRCFEAA
AKNLSTVTTPKKTEKKNQGINTIGGSIDIDARLTKKEHQEEKQKDLADAEKKIYRPIPDG
DFELVPLGEDPLKGIKIGTGLPDLVKKQLIACLKDNAELFAWSAAEMPGIDPEVACHQLT
LDPRASAVVQRRRKQSPEKAEAAEKAVKDLLEANFISEARYTTWLSNVVLVKKSNGKWRM
CVDYTDLNRACPKDAYPLPNIDKLVDNSSGFKLLSFMDAYSGYNQIKMAEIDKKKTAFMT
ESGNYYYNVMPFGLKNAGATYQRMMNKVFNNEIGDMLEVYMDDMIVKSEEEVDHTAHLKR
VFDQARKYNMRFNPEKCTFGVKAGKFLGFYLTERGIEANPDKCRAFFEFPTPDSKKSIQS
LNGMLTALSRFVAKSAQHALPLFKLLRKESAFEWTKECEDALQHLKRALSEPPVLTRPNE
GETLYLYLAVASEAISAVLIRETEQGQKPVYFVSKALQGPELRYLQIEKTALAVVMAARK
LRHYFLAHSIVVRTDQPIKQLLARPDMMGRMLKWSLELSEFEIFFESRKALKAQVLADFI
AEMTTSSTPDKNKWTIFVDGSSNPQGSGAGIILESGEGVLIEVSLELAFPTTNNQAEYEA
FLAGLRLAQDMEAEEIKIFTDSQLVASQITGEYQTKDERLTEYLNLIKEKLTKFRQTEIK
HVPREHNARADILSKLASTKRKKGGNQSLIQETLSKPSIVKPTEVFLICEIDANSWMTPV
FEFLNTGNLPLDKKEAAKVKRRACAYVILNGKMYRRGFSIPLLRCVEESEVASILGEIHE
GINGQHIGGRSLARKALRAGFYWPTMQADAKEHVNKCDKCQRHGDMHLAPPNELRTLSSP
WPFSWWGMDLLGPFPTAAGQNKYLIVAVDYFTKWIEAEPLAHITTFNVLRFFKRNILARF
GIPQVVVTDNGTQFTDKKVREFMAKIGTTQHFTSVEHPQTNGQAEAANRVILRGLKRRLD
EAKGKWTEELHSVLWSYRTTPHSTTGETPFRLTYGTEAVIPVETGASSFRTEVPLEGEDN
HEMLREELDLLEELRDGAALREATLKQKIAKRHDKKVIKREFDVGTLVLRRNQKDSREGK
LAANWEGPYRAKTENGAYYLEDLYGKEIPRPWNAEKLKQYYS
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggctggcgttaacaaccatcaaatcccggagcacgtggcggagaacaacgctcaacca
atggactacgcgccgtaccacccgctggacggccagttcgcctccgtgacggaagatggc
caagaggggcaagacgcacactacgagccctacaacccagaagaaccgcagatccctgtg
gctaccccgccacaggcgactccggcagtggctatccctccgggcgttcccatgcaagaa
atgatggctgcgctggtcaacgcaatcaaccgccagtcggacttactgctgcagcagaac
cagcgatacgagcagcagaatcaaaggctcgagcaacaaagccgtcgcatcgacgcaatt
gctgagtcgagggtcacggcgcaagctcgcccagctcgccgttcacccacacctgtgagg
agcagaacctactccaggtctcgctcaccacctcgccacagaagcgaaaggaggtcgagc
ccgaggagaaacgaggctatatctcgaaactccaccccgccgaggagacattcccctaga
agggacaaccctcctcgccgccaaaggaaccggtccccggaagaaagggacagtcaccaa
ggccccctctcccgaaggatccgagaactccccctaccggtcggactcgagaaaccaccg
gcaatggatacctacgatggctcgacagatccggacgagcacatcgaaaatcttgaagct
ctcctcgagtacagaaatgtacgaggctctatcaagtgtaagctctttcccacaactctg
aggaaaggcgctatggcttggtacaagagcttggcgccaggatccatagactcttggtcg
gacctgtgcgcccgcttccgggctcacttcacttcctcgaggcgtcacccaaaaactgaa
gcaaccctcgaagccattatccaaggcgagaacgagcctctaagggcctacctcgaacgg
ttcaacaaagcagccgtagaagtgaaggtcgaggagagtatgaagctgtatctcctcgac
aggggactacatccggacagcgactttgctaaagctgtcagtatcgaagagccgaagacg
ctggatgcattcttcgaaaaggcaaagaagtacattgcctacgaggagaaacagagggcc
aaagatctaagaaggcctaaaagtcaagaaaaaaccaggaaccatgaaaaagatgaagct
ggaacctcgcgaagaggtaacgaaaagcaaaaggaggaaaggattaaagattccaaacct
cctcggggaaaattcacaacatacactccactgaatgcgtcaagagatcgcattttcgcc
gaagtctccgctgcggacttcaaaaaggctgggatccacttcccaagacagcagcccatg
aaggcaaatactgataggacgaaattctgtcgctatcataaaagccatggacacgtcact
gaggactgtgtccacttaaaagatgccatagagattctgatacaaaagggttatgcccga
agatatgttcagaacgacgaacaagcacaacaacaacaacaacaaccaaggagggagcct
caagaggtcgcaatggccattgatgttcccgagcaggaaaacagaggcatcgtccctcag
gcgcttgccatctcagcacctgaaattccactcccatccccggggtcagacgagggagcg
ctcatgagacatttcaacgcccacctgaatggctcatgggaaaacttcccaaaagcactg
gtgataacaggtggagggctaaacaaaatcaccctcggatcggtaaaaagaaagttcgag
gagttggaaaacgtttgctcggtgactcccatcaccgtcaccaaacctgagggaggctcc
gacccgctggccttctacaaatcagaagttcctgggggctcgccaaactatcagatacca
ctattggtaagggctcgcatggcgaacttcgacgtccaccgcatcctcgtagatcagggg
agctcgtgcgacgtaatgtactcggggctattcaaaactctacagctgtcagagaagaac
ttggttccatatgtaggacccgaccttcaggggttcaacgggtcgactaccaagccttgg
ggatacgtggatctcatcgtcaccttcggcgaggaaaaggctatgaaatccgtgaggacg
caattcatggtcgtcgactgtccctcgctgtacaactgcatcatcggcagaactactttg
gcggagctgtttgctgtgtcgtccaccgttcacttgaaactaaaatactacacactggac
gaccaggtcgccaccatcaacggcgacatagctgctgcgaggagatgcttcgaggccgcg
gcaaaaaatctgagcaccgtgacaacccccaagaaaactgaaaagaaaaatcaggggata
aacactattggaggttccatcgacatcgatgctcgactcacgaaaaaagagcatcaagaa
gaaaaacagaaggacctcgccgatgctgaaaagaaaatctaccgccccatcccggacgga
gatttcgaactggtgcccttgggcgaagaccccctcaaagggatcaagattggaactgga
ctccccgacttggtcaaaaaacagctgatcgcctgccttaaggacaatgctgaactgttc
gcctggagcgctgcagagatgcctggcatcgaccctgaggtcgcttgtcaccagttgact
ttagatcctagggctagtgccgttgttcagcggcgtaggaagcagtctcccgaaaaagcg
gaggctgctgaaaaagctgtaaaagacctcctcgaggcaaatttcatttcggaagctagg
tataccacctggctatccaatgttgtacttgttaagaaatcgaatggaaaatggcgcatg
tgtgttgattataccgatcttaatagggcttgccctaaagacgcttaccctttacctaac
atagataaattagtagataattcatcaggatttaaattactatcatttatggatgcgtac
tcgggttataatcaaataaaaatggctgaaatcgataaaaagaaaacagcgtttatgacc
gaatccggtaattattattacaacgtaatgcctttcgggcttaaaaacgcaggtgccaca
taccaaaggatgatgaacaaagtcttcaataatgaaatcggtgacatgctcgaagtctac
atggatgatatgatcgtcaaatccgaggaggaagtcgatcatacagcccatctaaaaaga
gtgttcgaccaagcgagaaagtataacatgagattcaatcctgaaaaatgcacgttcggc
gtaaaagctgggaaattcctcgggttttacttaaccgaaagaggaatcgaagctaacccc
gataaatgcagagcattctttgaatttcccacgccggactcaaagaaatcaatacaatca
ttgaatgggatgctcacagccttatctcgttttgtcgcaaaatccgctcaacacgcgcta
cctttattcaaattacttagaaaagaatccgcattcgaatggacaaaggaatgcgaggat
gcgctacaacacttaaaacgagcactatccgagcctccagtcctaacgcgaccaaacgaa
ggggaaaccttatatctttatctcgccgtagcatcggaggccatcagcgccgttctcata
agagaaaccgagcaagggcaaaaacccgtctatttcgtgagcaaggctctgcaaggacca
gaactccggtatttacagattgaaaaaacggccttagcagtagtcatggccgcgaggaag
ctaagacactattttttagctcactccatcgtggttcgaaccgatcaaccgattaagcaa
ctcctcgcgaggccagatatgatgggacgaatgctaaaatggtcgctcgagttgtccgaa
ttcgaaatctttttcgaaagcagaaaggctttaaaagcccaagtactagcagacttcata
gccgaaatgaccacgtcgtctaccccggataaaaacaaatggaccatcttcgtagatgga
tcctcaaatccacaagggagcggcgcaggtatcatactcgaaagcggtgaaggagtgctc
atagaagtttcactcgaactcgcctttccaaccacaaacaatcaagccgagtacgaagct
ttcttggcaggattaaggttggctcaggatatggaagccgaggaaattaagatattcacg
gactcacagctcgtcgcatcacaaataaccggggaataccaaacaaaagacgagcgactc
acggaatacttaaacttgatcaaagaaaaattaaccaaattcagacaaaccgaaatcaag
cacgttcctcgcgaacacaatgcaagagcagatatcttatcaaagctcgcaagcactaaa
agaaagaaaggcggaaatcaatcgcttattcaggaaacgctatccaaaccaagcatagtg
aaacccactgaggtattcctgatatgcgagatcgacgccaacagctggatgacgcctgtg
ttcgaatttctgaacactggaaacctcccgcttgataagaaggaggcagctaaggtaaaa
agaagagcctgcgcatacgtaatcctaaacggaaaaatgtatcgccgaggattttccatc
cctctactaagatgtgtcgaggaaagcgaggtagcctcgatcctcggcgaaatccacgaa
ggaataaacggtcaacacatcggtggacgctccttggccagaaaggctttgcgagcagga
ttctattggcctaccatgcaagcagacgcaaaggagcatgtcaacaaatgtgacaaatgc
caacgtcacggggatatgcacttggcccctccaaacgagctaagaacgctatcctccccg
tggccgttttcttggtgggggatggacctcttaggaccgtttccaacggcagcaggacaa
aataaatacttaatagtagctgtcgactacttcacaaaatggatcgaagccgaacctctc
gcccacatcacaacattcaacgtgttgcgattcttcaaacgcaatatacttgcgaggttt
gggatccctcaagttgtcgttacagataacggaactcaattcacggacaagaaagtgcga
gagttcatggcaaaaataggtacaacccaacatttcacctctgtcgaacaccctcaaacg
aacggccaagccgaagctgcaaatagggttatactacgaggactcaaaagaaggttggat
gaagcaaagggaaaatggacagaagaactacacagcgtactatggtcataccgaaccact
ccacattctacaacgggagaaacgcccttccgactgacgtacggaacagaggccgtaatt
ccagtagaaaccggagcatcctccttccgaacggaagtaccccttgaaggggaagacaac
cacgaaatgctcagagaggagctcgacctcttggaagaactccgagacggcgcagccctc
cgagaagctactttgaaacaaaaaatagcaaaacggcatgacaaaaaggtcatcaagcga
gaatttgacgttgggacactagtactccgacgcaaccaaaaagattctcgcgagggtaaa
ctcgcggcaaattgggagggaccttatcgagccaaaaccgaaaacggtgcctattatttg
gaagatctttacggaaaagaaattcctcgaccttggaatgccgaaaagctcaaacaatac
tacagttga
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