Thalassiosira pseudonana: THAPSDRAFT_23311
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Entry
THAPSDRAFT_23311 CDS
T01078
Name
(RefSeq) predicted protein
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_23311
Membrane trafficking [BR:
tps04131
]
Protein recycling
Others
EARP complex
THAPSDRAFT_23311
Endosome - Golgi transport
Tethering complex
GARP complex
THAPSDRAFT_23311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
Sec6
VPS53_C
Syndetin_C
RINT1_TIP1
COG7
Motif
Other DBs
NCBI-GeneID:
7446354
NCBI-ProteinID:
XP_002291253
JGI:
23311
UniProt:
B8C4P3
LinkDB
All DBs
Position
6:1906451..1910108
Genome browser
AA seq
1088 aa
AA seq
DB search
MTNAPGSNSRQTGGTMVSLPPLKPVDMPPSGAADVASTATSNVVSSAGNSATAPPPQTAA
AAVKDPELLLDTIDSFSANSRYAVTSVADGGVEDVSTDQETSRSFDPISFLNQHYHTEHQ
LTSALPTLRTAISSRLTHLDDSLSTTLRHQAQLAPMIATDVIHARNAVIQLANRIQDVRE
QAQKSEVAVLEITKDMKRLDYAKRHLQRTITALKRLHMLLHAAEQLRMAALITPQQPVPN
YRVASHLIDATRLLLGHFEGYMGSVPKMRQVRDAVGVLRGQLREGIVSLFREVGFQQDGS
GGEGQRQIDDGLDEGENSNNNNAVVPASPPSAMVQATLSDACLVIEALGPKSKDAFIAEF
VSDHLEEYERLFNPSPAAAAKGGKKGNSSNPKSFKRESSTASSIGGGDNDNINPTSLDQV
EKRFAWYRDKLRSLQLKFNNVFPPHWNMHYCLTVSFLERTARHLKFALKKHGNTIRIAPF
NASSNTPSGGISLSAAKFGASLNVSTHGGGGGPSGSSYHSTGGGAGGDGSSGVSDGEKAV
TTLLKALQKTILFEKEMSAWLARDFGTKFMDPTELESASGEKKKGGEDDALEFDEQGRAV
AAGSAEGIKIKYERRKRTGGAEGVSSGVDTGGPVPPLVGIASTTFDDHMSPYVALEERTM
DEQLHAALSDSTVDTRGERPVFVSSTNLFIYMKNSITRCTALTKEKTFYLLQRAFQKKLR
SYANVLEKKLPQPQSQNVAKLALANIQAGGSAAGGGHATSSQSSSVVYRIPPGEEITICH
VIDTCEYCADTVEALEDLIRDKIGTKYKEKIDMSEDQDAFQDVTAKCIRVLVSGLEQRLD
AALKEMSRTNWSSFDMVGEESSYVRTIHLAIHPFVVQVRELIPSSYFRSFCDKFALSFAA
AYYRTLVGLKRISEAGTQQLLLDVYSVKTLLLKLPVLEGEKKTNVSRHNSTTPSKSLAGG
STIAPAMYTKMVNKEFRKLEVMLKLVGSPKELLIDMFRAQWDCSIDTSSMASDFLTIVNL
KGIRVSEQPALLESLGLGGAEGGVGGEGTSMTVNIQALQERGSDVAAKVNADLSQMRQRV
EDFRKGFR
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacgcccccggcagcaacagccgacaaacaggcggcacaatggtctctctgccc
cccttaaaaccggtcgatatgccaccatcgggggctgccgacgttgcttccactgccacc
tccaacgtcgtttcgtcggcgggcaactcggccacagctccgccaccgcaaacagcagca
gcagcagtgaaggatccagaattattactagatacaatagattcattctcggcgaatagt
cgatatgctgtgactagtgttgccgatggaggtgtggaggatgtgagcaccgatcaggaa
acatctcgctccttcgacccaatatccttcctaaaccaacactaccacaccgaacaccaa
ctaacctccgccctccccaccctccgcaccgccatctcctcccgtctcacccacctcgac
gactccctctccaccaccctccgacaccaagctcaactcgcacccatgattgccaccgat
gtcattcatgcacggaatgcagtgattcagttggcgaataggatacaagatgtgagagaa
caggctcaaaagagtgaggttgcagtgttggagattaccaaagatatgaaacggttggat
tatgccaagcgtcatttacagaggacaatcacggcgttgaagaggttgcatatgttgttg
catgcggcggagcagttacggatggcggcgttgattacgccgcagcaaccggtgccgaat
tatagggtggcgagtcatttgattgatgctactaggttgcttttggggcattttgagggg
tatatggggagtgtgcccaagatgaggcaggtgagggatgcagtgggagtgttgagggga
cagttgagggaggggattgtgagtttgtttagggaggtggggtttcaacaggatggtagt
ggaggagagggacaacgacagattgatgatggtttggatgagggggagaacagcaacaac
aacaatgcggtggtaccagcatctcctccatcagcaatggtgcaagcaacactgtcggat
gcatgtctcgtcattgaagcactgggtcccaaatccaaagatgctttcattgcagagttt
gtctctgatcacttggaagagtatgagaggctgttcaacccatctcccgcggctgctgcc
aaaggcggcaagaagggcaactcttccaacccaaagtcatttaaacgggaatcatccact
gcttcatccatcggcggaggagacaatgacaatatcaatccaacctcgctcgaccaagtc
gagaaacgatttgcatggtacagagacaaactccgctctctccaactcaaattcaacaat
gtctttccccctcattggaacatgcactattgtctcacagtcagcttcttggagcgaacc
gcgcgtcatttgaagtttgcgttgaagaagcatgggaatactattcgtattgctccgttt
aacgcttcttccaataccccttccggtggaatcagtctatcagctgccaagtttggtgca
tcgttgaatgtgtctactcatggaggaggaggaggaccgagtggttcttcgtatcattct
acgggtggtggtgccggaggagacggtagcagcggtgtgtcagatggagaaaaggcagtc
actacattgttgaaggcactccaaaagaccattctgttcgagaaggaaatgtcagcatgg
ttggcgagggactttggtaccaagtttatggatcctaccgagcttgagtcggctagtggt
gagaagaaaaagggaggagaagatgatgcattggagtttgacgagcaagggagagcagtg
gcagcaggatcagcagagggaatcaaaatcaagtacgaacgaagaaagaggactggtgga
gcagagggagtttctagtggagtggacactggagggccggttcctccattggttggcatc
gcctcaacaacgtttgatgatcacatgtcgccgtacgttgcattggaggaacgaacaatg
gacgaacaacttcatgcggctctgtctgacagtaccgttgacactcgtggtgaacgaccg
gtgtttgtctcatcgaccaatcttttcatttatatgaagaatagtattacgagatgtacg
gcgttgacaaaggagaagactttttacttgctgcagcgtgcctttcagaagaagttacga
agctatgccaatgtattggagaagaagttgccgcagcctcaatcgcaaaatgtggctaaa
ctggcattggcgaacatccaagcgggtgggagtgcagctggcggagggcatgctacttct
tcacaatcgtctagtgttgtgtatcgtattccgccaggagaagagattacgatctgccac
gttattgatacctgtgaatactgtgcagacaccgtggaagcgttggaagacctcattcgt
gataagattgggacaaagtacaaagaaaagattgacatgagcgaagatcaagatgccttc
caagatgtcactgccaaatgtattcgtgtgctggtctcgggtcttgagcaacgattggat
gccgcgttgaaggaaatgtcacggacgaactggtcatcgtttgatatggttggagaagag
tcgtcctatgttcgtacaatccaccttgccattcatccatttgtggtgcaagtgagagag
ttgattccttcgtcatactttcgcagcttctgtgataagttcgccctctcgtttgcagca
gcatattaccggacattggttggattgaaacgaatcagcgaggcaggcacgcaacaacta
ttgctggatgtgtacagtgtcaaaactcttctcctcaaacttccagttcttgaaggagag
aaaaagacaaatgtttcacgacataacagcactactccatccaaatctctcgctgggggt
tcaaccattgctcctgccatgtacacaaagatggtcaacaaagaattccgaaagttggaa
gtcatgctcaaactcgttggttcccccaaagaattgctcattgacatgttccgcgctcag
tgggattgttccattgacacctcatccatggcatctgacttcttaacaattgtcaatcta
aaggggattagggtcagtgagcaacctgctttgttggaatcgttggggttaggaggagct
gaaggcggagtaggcggtgagggaacttccatgacggtcaacatccaggcgttgcaggaa
cgtggatcagatgtggctgcgaaagtgaatgctgatttgagtcaaatgaggcagagagtg
gaagacttccgcaaggggttccgttag
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