Treponema pallidum subsp. pallidum DAL-1: TPADAL_0116
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Entry
TPADAL_0116 CDS
T01748
Symbol
uvrB
Name
(GenBank) excision endonuclease subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
tpu
Treponema pallidum subsp. pallidum DAL-1
Pathway
tpu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TPADAL_0116 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpu03400
]
TPADAL_0116 (uvrB)
DNA repair and recombination proteins [BR:
tpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TPADAL_0116 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TPADAL_0116 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_16
UB2H
DUF6101
AAA_22
DUF5713
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEZ60436
LinkDB
All DBs
Position
132872..134878
Genome browser
AA seq
668 aa
AA seq
DB search
MKEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTL
VISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINR
MRLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQY
ERNDAVLECGRFRVRGDVIEIFPAYLEEFYRIECDWDRVVRIRRIHPVSGAVLREFEELT
VYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMGY
CHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNLI
DFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQSVQIVEQLIRPTGLLDPCI
EVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEIETI
ERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGRAA
RNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVREQEV
KKDAARVQVAPLLRAADADVRTHAARKKMVQALRLHMKVCARELRFEEAALIRDKILQLQ
RQDEQNGV
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatttaaattacacgcttctttccaacctgcaggcgatcagattgccgcaatc
gacgcactcgtgcgtggcttgcatgcgggggcgcgttttcaaacgctcaagggtgttacc
ggttcggggaaaacgtttacagttgcaaacgttattgcacgcgtgcaaaaaccgacgctt
gtcatcagtcataataaaacgctctctgcacaattgtaccgggaatttaaaggttttttc
ccagacaatgcggtggagtattttgtgtcgtactacgattattatcagcctgaatcgtat
gtccctgctcgtgatctctacattgagaaagatgcttctatcaatgcagagataaataga
atgcgtttatctgcaacgtttagtctcatggaacgtcgtgatgttattgtagtcgcaact
gtttcgtgtatttacggtcttgggttgcctgaatcctggcgtgatctgcgtatccacgtg
gaagtcaaccagtgtcttgatcttgaagatctcaagcggcaacttgtatctctgcaatac
gagcgtaacgacgcggtgctcgagtgcggtcgcttccgagttcggggagacgttattgaa
attttccctgcgtatttagaagaattttatcgtatcgagtgcgattgggatcgagttgtt
cgtatccgtcgcattcatcctgtaagcggtgctgttctaagggaatttgaagaacttacc
gtttaccctgcaaagcattttgtacttaaagaggatgcaatccctcgcgccatggaccgt
attagacaagaactcgatgaacggttggtacaattaactcaagagaataagcttgcagaa
gcggcacgtttaaaaacgcgcacagaatacgatcttgaaatgctcggagagatggggtat
tgccacggtatagaaaattattctgcgccgattgcaggtagaaaatctggtgaaccgccg
gtgacgcttcttcattattttccaaaggattttgtgctctttgttgatgaaagtcacgta
acacttccgcagcttggtgcaatgtatgaaggagatcgggtgcgtaaacagaatctcatc
gattttggctttcgcttgccgtgtgcacgagataaccgtccactgaaagattcggaattt
gaggcattgttaaatcaagcagtttttatttctgcaactcctggggtgaaggaacgcaca
cagtctgtgcaaatagttgaacaactgattcgtcccactggacttttagatccatgcatc
gaagtgagaaaaacggatggacaaatagaagatatatgtcagcgggtaaaagcttgtagt
gcgcggaacgaacgtagtttggtgctaacattgacaaaaaaaatggctgaagatttaaca
gattatttcaatggactgggaataaggacaaagtatgttcattcggaaattgaaactatt
gaacgcgtagaaattctcacgagtctgcgtgcgggggaatgtgaggtattagttggaata
aatttattacgagaaggtattgatttgcccgaggtggcattcattgctattttggatgcc
aatatagtcggttttttacgttcgacgacgagtctcatccaaattattggtcgagcagca
cgtaatgctcgcggaactgtggtaatgtacgcggatgcaatcagcgatgcgatgcgtgaa
gcaatagaggaaactgctcgacggagaaagattcagatggcgtataatcgtgctcatggg
attacaccccgtacgattaaaaagtctattgaagatattctggtccgtgagcaggaagta
aaaaaagacgctgcgcgtgtacaggtcgcacccctgttgcgcgcagcagacgcagacgtg
cgcacacatgctgcacgcaaaaaaatggtacaggcgttgcgcctacacatgaaggtttgt
gcgcgtgagttacgatttgaagaggcagccctcatccgagacaaaattttgcaactgcaa
aggcaagacgagcaaaacggggtttga
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