Treponema pallidum subsp. pallidum DAL-1: TPADAL_0241
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Entry
TPADAL_0241 CDS
T01748
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tpu
Treponema pallidum subsp. pallidum DAL-1
Pathway
tpu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPADAL_0241 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpu03021
]
TPADAL_0241 (rpoB)
03400 DNA repair and recombination proteins [BR:
tpu03400
]
TPADAL_0241 (rpoB)
Enzymes [BR:
tpu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPADAL_0241 (rpoB)
Transcription machinery [BR:
tpu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPADAL_0241 (rpoB)
DNA repair and recombination proteins [BR:
tpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPADAL_0241 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEZ60565
LinkDB
All DBs
Position
246795..250331
Genome browser
AA seq
1178 aa
AA seq
DB search
MSARVCKTHRVYVGRDVRNFMDIPDLIEIQLRSYDTFLHGARNTPSGADTLISGTREELG
LEDVFKTTFPIESSTGDMTLEYQSYSLDEKNIKFSEAECKQKGLTYAIPLKALVDLRFNN
TGEIRRKDIYMGDIPKMTERGTFIINGAERVVVSQIHRSPGVVFSHEKDKEGREVFSSRI
IPYRGSWLEFEIDQKKDLIYAKLDKKRRILGTVFLRALHYETREQIIEAFYAIEKTPVCQ
DRAEYELLTGKILARSVTVENEQGETRVLYKAGEKIHPHVIDDLLQNGICEVYIINLEAE
GSLRSAVVINCLEREEMKFSKSGAQDELSREEALCIVYSALRPSDPMTMDAAEKDLQTMF
FSPRRYDLGRVGRYKLNKKFRSDSPTTECTLTLDDIVNTMKFLIRMYSGDAQEDDIDHLG
NRRIRSVGELMTNTLKTAFLRMERIAKERMSSKETETIKPQDLISIKPIMAAIKEFFGAS
QLSQFMDQVNPLAELTHKRRLNALGPGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNI
GLIVSMANYARVNGYGFLEVPYVRVRDGVVTKEIEYLDAMDEDRYYIGQDSTAVGPDGVI
RVDHVSCRHRGDYSTRSPKDIQYMDVSPKQIISVSASLIPFLEHDDANRALMGSNMQRQG
VPLIFPEPPRVGTGMEEKCAYDSGVLVKAKQDGTVAYVSSEKIVVCSAAASGEEQEVVYP
LLKYQRTNQDTCYHQRPIVHVGDRVQVGDALADGPATYRGELALGRNILVGFVPWNGYNY
EDAILISHRVVKEDMFTSVHIKEFSTEVRETKLGSERMTNDIPNKSEKNLDNLDAEGIIR
IGSKVRAGDVLIGKITPKSESETTPEFRLLNSIFGEKAKEVRDSSLRVPHGVEGTVIDVQ
RLRRSEGDDLNPGVSEVVKVLIATKRKLREGDKMAGRHGNKGIVARILPEEDMPYLDDGT
PLDVCLNPLGVPSRMNIGQILESELGLAGLRLDEWYESPVFQSPSNEQIGEKLMQAGFPT
NSKVMLRDGRTGDYFQNPVFVGVIYFMKLAHLVDDKMHARSTGPYSLVTQQPLGGKAQFG
GQRLGEMEVWALEAYGAANTLQELLTIKSDDMHGRSKIYEAIVKGEASSPTGIPESFNVL
VQELRGLALDFTIYDAKGKQIPLTERDEEMTNKIGSKF
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcacgagtttgcaaaacacacagagtgtacgtgggaagggatgtcaggaatttt
atggacatcccggatctcatcgaaatccagcttcgatcttacgacacctttctgcatggg
gcccggaatacaccgtccggcgccgacacccttatctccggtactagagaggagctcggc
ctcgaagacgtgttcaagactacctttcctatcgagagctctacgggggacatgacgctc
gagtaccaatcatactcccttgatgagaaaaacatcaagttctccgaggcggagtgtaaa
caaaagggtttgacgtacgccattccgctgaaggcgcttgttgatttacgtttcaataat
acgggggagattaggcgcaaagacatttatatgggagatatccccaagatgactgaacgc
ggcacctttatcatcaacggtgcggagcgtgtggtggtatcccagatccatcgttcccct
ggtgttgtcttttctcatgagaaggacaaggaaggacgggaggtattctccagccgcatt
attccgtaccggggaagctggcttgaatttgaaattgatcagaaaaaagatctcatctat
gcaaagcttgataaaaagagacgtatcctaggcaccgtgtttttgcgtgcgttgcactac
gaaacgcgtgagcagatcatcgaggccttttacgccatagaaaagacgcctgtttgtcag
gatcgtgcggagtacgagctgctcacaggtaagatcctagcacgatcggtgacggtggaa
aatgagcagggtgaaacccgggtgttgtacaaagcaggagagaaaatccatccccatgtc
atcgatgatctgctgcaaaacggcatatgtgaggtctacattattaaccttgaagcggaa
ggttcgttgcgttctgcggtcgttatcaattgtcttgaacgagaggaaatgaagttctct
aagtcgggtgcacaggacgagctttcgcgtgaagaggcactgtgtattgtatactcagcg
ctaagaccaagcgatcctatgaccatggacgcggcggaaaaagatttgcagacaatgttt
ttctccccacgtcgctatgatttagggcgggtggggcgctacaagctgaacaagaaattt
cgctctgactcgccgactactgagtgcacgctcaccctcgatgatatcgtaaataccatg
aaatttctcatcagaatgtatagcggtgatgcacaggaagatgatatcgatcacctgggc
aaccgtcgtattcgttcggtgggggaattaatgaccaatacgttaaaaacggcctttttg
cgcatggaacgtattgcgaaggagcgtatgagttctaaggaaacggaaacgatcaagccg
caggatctcatttccataaaacctatcatggctgcgattaaggagttctttggtgcaagt
cagctttctcagttcatggatcaggtcaatccgctggcggagttgacacacaagcggcgt
ttgaacgcacttggtcctggtggactttcaagggagcgtgctgggtttgaggtacgcgat
gtgcactacacgcactacggtcggatgtgtcccattgagacccccgaaggaccaaatatc
ggtttaattgtttctatggccaattacgcacgcgttaacgggtatgggttcttggaggtg
ccgtatgtacgggtgcgtgacggagttgttacgaaagagattgagtacctggatgctatg
gacgaggatcgctactacattgggcaggattctacggcggtaggaccggacggggtcatc
cgtgtagatcatgtctcttgtcggcaccggggggattacagtacgcgtagtcctaaggat
atccagtatatggatgtttcccccaagcagataatttctgtttctgcttctctcataccg
tttcttgagcatgatgatgctaaccgtgcgttaatggggtcgaacatgcaacggcaggga
gtgccgcttatttttcctgaacccccgcgcgtgggtacaggcatggaagagaagtgtgca
tatgactctggagtgctggtgaaggcaaagcaagacggaacggttgcctacgtttcctca
gagaagatagtggtttgttccgccgcggcgtctggggaagagcaggaggtcgtgtatccg
ttacttaagtatcagcggacaaatcaggatacctgttaccaccagcggccaatagtgcac
gtgggagatcgggtacaggtaggagatgcgcttgcagacggtcctgcaacgtatcgaggg
gagcttgcgcttggcagaaacattctagttggttttgtgccgtggaacggttacaactac
gaggatgccattttgatttctcaccgggtggtaaaggaggatatgttcacctcggttcac
atcaaagaattttctactgaggtgcgtgaaaccaagctgggttctgaacgaatgacgaat
gatatcccgaataagtctgagaagaatctggataatttggatgcagaggggatcattcgt
attgggtcaaaggtgcgtgcgggagacgtgcttatcggaaagattacgccaaaaagcgag
tctgagacgacgccagagtttaggctgctgaattctatttttggggagaaggcgaaggaa
gtgcgtgattcttctctacgtgtgccgcatggagttgagggtacagtcattgacgtgcag
cgactcaggcgttcggagggagatgatttaaaccccggggtgtcagaggtggtgaaggtt
cttatcgctaccaagcgtaagctgcgtgaaggggataaaatggccggtcgccacggtaac
aagggtatcgttgcgcgcatccttcctgaagaagacatgccgtatctggatgatggtacc
ccgcttgatgtctgtttgaacccgctcggtgtaccttctcgtatgaacataggacagatt
cttgaatctgaattgggacttgcggggttgcggcttgacgaatggtatgagtctcctgtc
tttcaatctccaagcaacgagcagattggggaaaagttgatgcaggcaggttttccgact
aattcaaaagtgatgctgcgtgacggacgcacgggggattattttcaaaaccctgtattt
gtgggggttatttactttatgaagcttgcgcatctagtggatgacaaaatgcacgcccgc
tctacaggtccatattcgcttgtgacgcagcaacccttagggggtaaagcgcagtttgga
gggcagcgtctcggggaaatggaggtgtgggcgcttgaagcctacggcgcggcgaatacc
ctgcaggagttgctaacgattaaatcggatgatatgcacgggcgttctaaaatttatgag
gcaattgtaaaaggggaggcttcgtctcctaccggtattcctgaatcttttaacgtgttg
gtgcaggagctgcggggacttgcgctcgactttacgatttacgatgcgaagggcaagcag
attccgctcactgagcgcgatgaagaaatgacgaataagattggctctaaattttaa
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