Tsukamurella pulmonis: TPB0596_02810
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Entry
TPB0596_02810 CDS
T08311
Symbol
ligD_1
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tpul
Tsukamurella pulmonis
Pathway
tpul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tpul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TPB0596_02810 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpul03400
]
TPB0596_02810 (ligD_1)
Enzymes [BR:
tpul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TPB0596_02810 (ligD_1)
DNA repair and recombination proteins [BR:
tpul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TPB0596_02810 (ligD_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BDD80518
LinkDB
All DBs
Position
complement(290165..292513)
Genome browser
AA seq
782 aa
AA seq
DB search
MAQIRENREVDGVGVQLTNLDKVLYPATGTTKAEVIDYFQAIAPFALPHLRDRPLTRKRW
PNGVDKTAFFEKRLPSHAPAWIRRASQFHSDGESQYPVIENAAGMVWLGQQAALELHVPQ
WSFVPDDADPAGPETPGPPNRLVLDLDPGPGVTLDDCAVLALRIRELLAAIGMEGYPVTS
GSKGLHVYAPLTTGISAQGARKVAHAIAAQLEAESPALVTASMAKDQRGGRIFVDWSQNS
ASKTTVAPYSLRGRDRPWVAAPRTWDELARPGLRQLEFGEVLARARSDGDLLAGLAAPSA
PPPEPVDLGEYRAKRDARKTPEPFGGAPSTGEPIFVIQEHHARRLHYDFRLEHDGVLASW
AVPKNLPDDPEINHLAVRTEDHPMDYAAFEGSIPKGEYGGGDVSIWDHGTYELEKWRANE
VIVTLHGNRLQGKRYALIRTGEKNWLAHLTKDKAAPAKPAAAPAPDPMLPTESSIDGLSG
ADWAFEGKWDGYRMIATVRGGTVSLRTRSGRTVTAEFPEFESLAHDLDGMDVVLDGEAVV
LDPDGVPSFHLMAGGDTRAGAVQLYVFDVLALNGVDLTKRPWTVRRQVLDGLAPLLEADT
AVSVPPLVQAETGAEAAAISAARGWEGIIAKRRDSPYLPGQRVRAWVKHKNWRDLQVAIG
GWKPGKGSRANGIGSVLVGLPTETGLVYLGAVGSGFSDRDLAALQEELEPLRMRRSPFTA
PIDDPEARGAVWVLPKVIGDVRYSSLRRGGHLRQPSWRGFRRDLLPGDLPSAEDAPWEGP
KE
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcagatccgggagaaccgcgaggtcgacggcgtcggcgtgcagctgaccaacctc
gacaaggtgctctaccccgccacaggcaccacgaaggccgaggtcatcgactacttccag
gccatcgcgccgttcgcgctcccgcacctgcgggatcggccgctcacccgcaagcgctgg
cccaacggcgtcgacaagaccgccttcttcgagaagcggctgccgagccacgcgccggcc
tggatccgccgcgcgagccagttccactccgacggcgaatcgcagtacccggtcatcgag
aacgccgcgggcatggtgtggctcggacagcaggccgcactggaactgcacgtgccgcag
tggtccttcgtccccgacgatgccgatcccgccggcccggaaacccccggcccgccgaac
cgcctcgtcctggacctcgacccgggccccggcgtcacgctcgacgactgcgccgtcctc
gcgctgcgcatccgggaactgctcgcggcgatcggcatggagggttaccccgtgaccagc
ggctccaaggggctgcacgtctacgcgccgctcaccacgggcatctcggcgcagggcgca
cggaaggtggcgcacgcgatcgcggcccagctcgaggccgagtcccccgcactggtcacg
gcgtcgatggccaaggaccagcgcgggggccgcatcttcgtcgactggtcgcagaacagc
gcctcgaagaccaccgtcgcgccgtactccctgcgcggccgggaccgtccctgggtcgcc
gcgccgcgcacctgggacgagctcgcacggccgggcctgcggcagctcgagttcggcgaa
gtgctcgctcgcgcgcgctccgacggcgacctcctcgccggcctcgcggcaccgtctgcg
ccgccgcccgagcccgtcgacctgggtgagtaccgcgccaagcgcgacgcgcggaagacg
cccgagccgttcggcggcgcaccgtcgaccggcgagccgatcttcgtcatccaggagcac
cacgcgcggcgcctgcactacgacttccgcctggagcacgacggggtgctcgcctcctgg
gccgtgccgaagaacctgcccgacgacccggagatcaaccacctcgccgtccgcaccgag
gaccatccgatggactacgcggccttcgagggcagcatcccgaagggcgagtacggcggc
ggcgacgtgagcatctgggatcacggcacgtacgaactggagaagtggcgcgcgaacgag
gtgatcgtgacgctgcacgggaatcggctgcagggcaagcggtacgcgctcatccgcacc
ggggagaagaactggctggcgcacctgaccaaggacaaggcggcgccggcgaagccggcc
gccgcccccgcgccggatccgatgctgcccaccgaatcgtcgatcgacgggctctcgggc
gcggactgggccttcgagggcaagtgggacggctaccgcatgatcgcgacggtgcgcggc
ggcacggtctccctgcgcacccgctccggtcgcacggtgacggcggagttccccgagttc
gagtcgctcgcccacgatctcgacgggatggacgtggtgctcgacggcgaggcggtggtg
ctcgacccggacggcgtcccgtcgttccacctgatggcgggcggcgacacccgggcgggc
gcggtgcagctgtacgtcttcgacgtgctggcgctcaacggggtggacctgacgaaacgc
ccgtggacggtgcggcgccaggtcctcgacgggctggcgccgctgctcgaggccgacacc
gcggtgagcgtgccgccactggtgcaggccgagaccggtgcggaggcggcggcgatcagc
gcggcgcggggctgggaggggatcatcgccaagcggcgggactcgccgtacctccccggc
cagcgggtgcgggcctgggtcaagcacaagaactggcgcgacctgcaggtggcgatcggc
ggctggaagccggggaagggctcgcgggcgaacggcatcggctcggtgctcgtggggctg
cccacggagacggggctggtgtacctgggcgccgtcggttccgggttcagcgaccgcgac
ctggcggcgctgcaggaggaactcgagcccctgcgcatgcgccgctcccccttcaccgcg
ccgatcgacgatcccgaggcccgcggcgccgtctgggtgctgccgaaggtgatcggcgac
gtgcggtactcgtcgctgcgccggggcggccacctgcggcaaccgagctggcggggcttc
cggcgcgatctgctccccggcgatcttccgtccgctgaggacgcgccctgggagggcccc
aaggaatag
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