Thermacetogenium phaeum: Tph_c08080
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Entry
Tph_c08080 CDS
T02276
Symbol
ligD1
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tpz
Thermacetogenium phaeum
Pathway
tpz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tph_c08080 (ligD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpz03400
]
Tph_c08080 (ligD1)
Enzymes [BR:
tpz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Tph_c08080 (ligD1)
DNA repair and recombination proteins [BR:
tpz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Tph_c08080 (ligD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AFV11038
UniProt:
K4LDW0
LinkDB
All DBs
Position
831863..832780
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AA seq
305 aa
AA seq
DB search
MPVADKKVLVAIEGKELQLSNLDKVLYPAGGFTKAQVIDYYTKISPALLPHLRGRPVTFK
RYPDGVRGESFYQKECPARRPQWLRTAPLRIRGGREINYCLLEDLPSLIWAANLAALELH
TSLSLADDPLSPNFLAFDLDPGPPAGIIECCRVALILSRLLRRFHLEGFPKTSGSKGLQV
YVPLNTPVSYERTKGFARACAEALEIQLPELVVSRMRKDLRTGKVFIDWSQNDPHKTTIS
VYSLRARERPTVSTPVSWSEVEAAVKRDDPELLFFEAEEAIERFAKWGDLFGPVVEKQQV
LPCFQ
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgccggttgcagataagaaagtgttggtggctatagagggcaaggagctgcagctttca
aacctggacaaggttctttacccggccggggggtttaccaaagcccaggtgatcgattat
tacacaaaaatatctccggcgctgctgcctcatctccgcgggcggccggtgacctttaag
cgttatcccgatggcgtccggggggaatctttctaccagaaggagtgccccgcgcgccgt
ccgcagtggctgaggacggcgccgcttcgcatcagaggggggcgagagatcaactactgt
cttctggaggatctgccttcactgatctgggcggccaatctggccgcccttgaactacac
acctcgctttcacttgccgatgatcccctgtcccctaactttttggcttttgacctggac
cccggtcctcctgcaggcatcatcgagtgttgccgggtagctctgattttgagcaggctt
ctccgccgcttccatctcgaaggctttcccaagacttccggttccaagggactgcaggtt
tatgtgcccttgaatactcctgtgagttacgagcgaacaaagggattcgccagagcctgt
gctgaggctttggagatacagctaccggagttagtggtttcccggatgagaaaagacctg
cgcacagggaaggtctttatcgattggagccaaaacgaccctcacaagacgacgatctcc
gtttattctttgcgtgcaagggagcgcccgacggtttccaccccggtgagctggtcggag
gtggaagcagcagttaaaagggatgaccccgagctgctgttttttgaggcagaggaggcc
attgagcggtttgcaaaatggggggatctctttggtccggtagtggagaagcagcaggtt
ttgccttgttttcagtga
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