Trichoderma reesei QM6a: TRIREDRAFT_58509
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Entry
TRIREDRAFT_58509 CDS
T02991
Name
(RefSeq) DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tre
Trichoderma reesei QM6a
Pathway
tre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TRIREDRAFT_58509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tre03400
]
TRIREDRAFT_58509
Enzymes [BR:
tre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TRIREDRAFT_58509
DNA repair and recombination proteins [BR:
tre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TRIREDRAFT_58509
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
RNA_ligase
BRCT_2
DNA_ligase_A_C
DNA_ligase_IV
LIG3_BRCT
Bac_globin
Motif
Other DBs
NCBI-GeneID:
18486306
NCBI-ProteinID:
XP_006963892
JGI:
Trire2_58509
UniProt:
G0REV3
LinkDB
All DBs
Position
Unknown
AA seq
960 aa
AA seq
DB search
RYPNKPRNHSKTLKFAELFKELFNPLNDNKKQPSGPSIPASKRGPHGLTKLSPQEQRRHI
IERFITRWRKEVGNDFYPALRLILPDKDRDRGVYGLKENAIGKLLVKLMKIDKNSEDGYN
LLHWKLPGQTTGARLAGDFAGRCFEVISKRPMRTQVGDMTIAEVNHQLDKLAASSGEAEN
LRIFETFYNRMNAEELMWLIRIILKQMKVGATEKTFLYLWHPDAEALFSVSSSLRRVCWE
LYDPEFRLEQDEAGIAVMQCFQPQLAQFQMPASFQKMIELLRPTEDDAEFWIEEKLDGER
MQMHMMEDPNHPGGRRFRWWSRKAKDYTYLYGDGLLDENSSLTRHLKNAFAPGVRNLILD
GEMITWDMGVDKIVPFGTLKSAAIAEQSNKSESNAAGHRPLFRVFDILYLNDKQLTQYTL
RDRRNALQKAIRPVHRRLEIHEYTPATSADAIEPLLREVVANASEGLVLKNPRSMYRLNS
RNDDWLKVKPEYMSEFGESLDCVIIGGYYGSGRRGGMLSSFLCGLRVSPNHIQAGANPEK
CFSFFKVGGGFRTEDYAEIRHRTDGKWMEWDPKNPPSEYIELGGGEAKQYERPDMWIRPK
DSVVVSVKAASVGPSDQFARGFTLRFPRFRRLRLDRSWDTALSLEEFQELKQRVESELKA
TEMTVEDRRRRNPKRIKKELVIAGDDTAPPLFEGNKTKLFEGLEFCVLSESLKPYKKTKP
QLEAIIKENGGSISQRAAAGTRMILIADKRVVKVASLIKDGNADIIRPRWIRDCLEQPDG
GFLLPYEPGRHIFHATDALAEVAAQNTDRYGDSYARDVDVEELRELMRDMPKLEDRQTFD
KMLFLEQLEQHGKDVGSLRNFMFSRCRVLLYLVDGAKESARDKWERYVRYGGGSVSRDAD
DDSVTHIVVLGDDVMEVGDVGDKLRSKLSSRRKMPRLVSEGWVEESWRERTLLDEERYAV
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
aggtatcccaataagccgaggaaccactccaagacgctcaagttcgcagagctgttcaag
gagctgttcaaccccctcaacgacaacaagaagcagccttctggcccatcaattcccgca
agcaaaaggggccctcatggactgacaaagctatcgcctcaggagcagaggcggcacatc
atcgagaggttcatcaccagatggagaaaggaagtcggcaatgacttttaccctgctttg
cgactcatcctgccggacaaggatcgagatcgcggcgtctacggcctgaaggagaatgcc
atcgggaagcttttggtgaaattgatgaagattgacaagaactcggaagatggctacaat
ctcttgcactggaagctgccaggccaaacaaccggcgcgcgtctggcgggtgactttgcg
ggccggtgcttcgaggtcatctcgaaacggcccatgcgcacccaagtcggagacatgacc
attgcagaggtcaatcatcaactggataagctggctgcctcgagcggagaagctgaaaac
ctccgcatctttgaaaccttttacaatcgcatgaatgcggaagagcttatgtggctcatc
cgcatcattctgaagcagatgaaggtgggcgctaccgagaagacgttcctatacctgtgg
caccccgatgccgaggctcttttcagcgtgtcatccagtctcaggcgcgtatgctgggag
ctttacgaccccgagtttcgactcgaacaggatgaggcgggcattgcagttatgcagtgc
ttccagccacagcttgcccagttccagatgccggcctcgttccaaaagatgattgagctg
ctacggccgacggaagatgacgccgagttttggatcgaggagaagctcgacggcgagcgc
atgcagatgcacatgatggaggaccctaaccaccccgggggtcggagattccgctggtgg
tcgagaaaggccaaggactacacctatctctatggcgacggcttactggatgagaactcc
agcttgacgaggcatctcaagaacgcctttgcacccggcgtgcgtaacctgattctcgat
ggcgagatgatcacctgggacatgggcgtggacaagattgtcccctttggtactctcaag
tcggctgccatcgcagaacaaagcaacaagtccgaatccaacgcggccggccaccgcccg
ctgtttcgcgtgttcgacatactgtatctcaacgacaagcagctgacgcagtacaccctg
cgcgatcgccgaaatgcactgcaaaaggcaatcaggccggtccatcgccgactggaaatc
cacgaatacacgcccgccacctcagccgatgccatcgagccccttctgcgcgaggtcgtc
gccaacgcgtcagaaggcctcgtgttgaagaacccacggtccatgtatcgcctcaacagc
cgcaacgacgactggcttaaggtaaagcccgagtacatgtccgagttcggcgagtcgctc
gactgcgtcatcatcggcggctactatggctcgggacgacgaggagggatgctgtcgagc
ttcctgtgcggcctccgcgtcagcccgaaccacatccaggccggcgccaacccagaaaag
tgcttcagcttcttcaaagtcggcggcggcttccgcacagaggactacgccgagatcagg
caccgaacagacggcaagtggatggagtgggatcccaaaaacccgccgtccgagtacatt
gagctgggcggcggcgaggccaagcagtacgaacggcccgacatgtggattcggccaaag
gactccgtcgtggtctctgtcaaggcggccagcgtcggtccgtcggatcagttcgcccgg
ggcttcaccctgcgattccctcggtttcgaagactacgactcgaccgcagctgggacacg
gccctgtctctagaggagtttcaagagctcaagcagagggtagaatcggaactcaaagcg
accgagatgacagtcgaagaccgcaggaggcgaaacccaaagcgaatcaagaaagagctc
gtcatcgcgggcgacgacacagctcctcccctattcgaaggcaacaagacgaagctcttc
gaaggtctcgaattctgcgtcctatccgaatcgctcaagccctacaaaaagaccaaacca
cagctcgaagccatcatcaaagaaaacggaggctcaatatcgcaaagagccgccgcaggc
acgagaatgatcctcatagccgacaaaagagtcgtcaaagtcgccagcctcatcaaagac
ggcaacgcagacattatccggccccgctggatcagggactgtctggagcagcccgacggc
ggattcttgctcccgtacgagccggggcggcatatattccacgcgacggacgccctggca
gaagtcgctgcgcagaacacggatcggtacggggatagctacgcgcgcgatgtggatgtt
gaggagttgcgcgagttgatgagggacatgccgaagctcgaggacaggcagacgtttgac
aagatgctgtttctggaacaactggagcagcatggcaaggacgtcggttccctgcgaaac
tttatgttttcgcgctgcagggtgctgctttacctcgtcgacggcgcaaaggagagcgca
cgggataaatgggagaggtacgtccgctacgggggcggttccgtcagccgagatgcagac
gacgactcggtgacgcatattgttgtgctgggagacgatgtgatggaggttggcgacgtg
ggggacaagttgcggtcgaagctgagttcgaggaggaagatgccgaggttggtgagcgag
gggtgggtggaagagagttggcgggagaggacgcttttggacgaggagcggtatgctgtc
tga
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