Triplophysa rosa: 130559545
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Entry
130559545 CDS
T09216
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tros00536
]
130559545 (col13a1)
Glycosaminoglycan binding proteins [BR:
tros00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130559545 (col13a1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130559545
NCBI-ProteinID:
XP_057198674
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Position
LG9:9356495..9404424
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AA seq
641 aa
AA seq
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MGIPGRMGIKGNSGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGPK
GDMGARGPKGVPGEPGPKGEKGVCGDYTHRQMLPITVRNMPSISPLILKRLKQGETGAQG
PPGPPGPPGSPGPTGTSGPPGKPGEPGKPGKDPRMLPGLKGEPGVSGQKGDRGEAGPSGP
EGPKGHKGDHGLKGGQGLAGQTGEKGDKGDLGMPGKQGVKGEPGFPGIPGQKGQAGFSGI
PGKRGYKGEKAEPSAAGSGIKGEPGAPGLPGPKGEKGDYGIKGEPGLEGPSGPRGPPGPT
GEPGKTLINENDIRNVHSMGPPGLPGPPGPAGTPGLKGDIGLPGAPGHDGEKGPRGKPGE
PGPIGPPGLEGPRGEGGVMGFSGPKGDKGDMGPSGSPGLDGPTGERGLSGPPGPIGLPGP
MGQKGEPGEKGDKAELVYGPAGPPGPAGPVGPLGPSGLSGPKGEPGVGLRGDKGSPGQKG
DKGDRGHLGLPGAHGLDGKPGPVGLIGPAGVSGPAGPKGEMGEKGDMGVAGPIGPQGIPG
LVGPPGLKGNRVFLSPFPPPAPWPVSRGSVCRVGPGRPLCTPLTPGLLLLLLHPNVLAWG
ERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNK
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgggcattcctggaagaatgggcataaaggggaactctggggagaagggagcaccaggg
gagccgggtctgtctatcattggcccaagaggacctcctggacagcctggcactagagga
tttccaggttttccgggtcccattggcttagacgggaaacctggacagaatggtccaaag
ggagatatgggtgctcgtggtcctaaaggagttccaggtgaacctggtccaaaaggagag
aagggtgtgtgtggtgactatactcacaggcagatgttgcccatcaccgttcgcaacatg
ccctcaataagccctctaatcctaaagcgcctcaagcagggcgagaccggagcacaggga
ccaccggggcctcctggccccccaggaagtcctggacctacaggcactagtggaccccct
ggtaaacctggagaacccggcaaacctggaaaggacccaaggatgctaccagggctgaag
ggtgagcctggtgtctctggacaaaagggtgatcgtggtgaggcgggtccaagtggacct
gaaggccccaagggtcataaaggagatcatggcctaaagggagggcaaggactggctggg
caaacaggagaaaaaggagacaagggtgatctaggaatgcctgggaaacaaggagtgaag
ggagagcctggttttccgggcatccctggtcaaaagggtcaggcgggtttttctggtatc
cctgggaaacggggttacaagggagagaaagctgaacccagtgctgcaggaagtggcatc
aaaggagaaccaggtgccccaggactgcctggacccaagggtgagaaaggagattatggc
ataaagggtgaacctggtctggaaggtccctctggaccaaggggtccaccaggtcctaca
ggcgagccaggaaagactttgatcaatgagaatgatattcgtaatgtgcattcaatgggc
cctcctggtctaccaggacctccagggcctgctggcactccaggcttgaagggtgatatt
ggactgccaggtgcccctggtcatgatggcgaaaagggtccacgaggaaagccaggagaa
ccaggacccattggcccacctggactagaggggccacgaggagagggaggagttatgggc
ttctctggaccaaaaggagacaagggggacatgggcccttctggatcacccggtttagat
ggccctacaggagaaagggggctttcagggccccctggtcccattggattgccaggccca
atgggtcagaaaggtgaacctggagagaaaggagacaaagcagagctggtttacgggcct
gctgggcctccaggacctgctgggccagttgggccgttgggaccttcaggtttgtcagga
ccaaagggagagccaggagttggtttgagaggagacaaggggtcacctggacaaaaggga
gataaaggagacagaggccatcttggactccctggggctcatggtttagacggcaagcct
ggtccagtgggtctgataggaccagctggggtttctgggcctgcaggaccaaaaggagaa
atgggggaaaagggagatatgggagtagcaggaccaattgggcctcaaggcatccctggt
ttagtaggaccaccgggattaaaaggaaaccgggtcttcttatccccttttcctccccct
gcaccctggcctgtgtcccgtggctctgtttgccgagtcgggccgggtcgtcctctctgt
acccctctcacccctggccttctcctgctcctcctgcatcctaatgttttagcctggggg
gagaggggcaagaagggcaacaggggggccaaaggggataagggagaccagggagcccca
ggattagatgccccgtgtccgttgggtgatgatggtctgccagtaccagggtgttggaat
aaatga
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