Trichoderma reesei RUT C-30: M419DRAFT_112083
Help
Entry
M419DRAFT_112083 CDS
T06031
Name
(GenBank) DNA-directed RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
trr
Trichoderma reesei RUT C-30
Pathway
trr03020
RNA polymerase
trr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
trr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M419DRAFT_112083
09124 Replication and repair
03420 Nucleotide excision repair
M419DRAFT_112083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trr03021
]
M419DRAFT_112083
03400 DNA repair and recombination proteins [BR:
trr03400
]
M419DRAFT_112083
Enzymes [BR:
trr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M419DRAFT_112083
Transcription machinery [BR:
trr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
M419DRAFT_112083
DNA repair and recombination proteins [BR:
trr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
M419DRAFT_112083
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
UNC80_N
MafB
Motif
Other DBs
NCBI-ProteinID:
ETS00895
JGI:
TrireRUTC30_1_112083
UniProt:
A0A024S6F3
LinkDB
All DBs
Position
Unknown
AA seq
1755 aa
AA seq
DB search
MANLYFTHSSAPLKTVQEIQFGLMSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLL
GSIDRQFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADES
DPEFVAAINTRDAKLRFKRVWAVCKKKRRCENDDRSEKNKDEEFAPGMKPAVVESHGGCG
NVQPQVRQVALQLKAAFEVVQEDGPKRKETAPITPEMAHSILRRISEKDLRNMGLNSDYA
RPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQ
HIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVD
FSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVI
RSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYS
TFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQD
SLAGAYKLCRRDTFLDKNQVMNLMLWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPKEI
SLHAPEDKSDSPLKDAGLLIQAGELMYGLMKKKNIGSASGGVIHLCYNELGPEGAMAFLN
GVQQVVTYWLLQNGHSIGIGDTIPDKQTIEKVQVHIDTQKAEVARLTAMATNNELEALPG
MNVRATFENKVSMALNMARDQAGTTTQKSLKDSNNAVTMAESGSKGSSINISQMTALVGQ
QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDT
AVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFLYGEDGLDAMCIEKQKLGILK
MSDEAFEKKYRLDLANPPDWFRKDYEYGNELTGDKASMALLDEEWDQLLADRREVREINR
SKMGEEMMQLPLNIGRMIETAKRVFNVKANDRSNLRPSDVIPVVRNVINKLKIVRGEDQI
SKEADTSATILFKALLRSRLAFKEVVKEHRLNKLAFEHVLGELQNRWDRSFVNPGEMVGV
LAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKNIKTPSMAVYLDTPLAK
QEQAKKLRSLVEYTNLRSITSVTEIYYDPDVQSTTIPEDLDMVESYFLIPDDSQDTIDQQ
SRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSDNNADEQVIRIRTIRQDEK
DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLVEAADGSELALKDDPR
CTQWYLDTSGSALREVLAVPGVDPTRTYTNDLWQIIEVFGIEGTRAALVKELTAVLAFDG
SYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDD
CRGISENVMLGQMAPMGTGNFDVYLDPKMLETVISDNSRMGLMPGMPVKEGDVEGAATPY
DTGSPMGDSGYLSLNSPAAGNFSPIQGAGSETPAGFGTEYGGGGFGGIGSMSPYSMRGAT
SPFSTSPTSPFSSGMGGYSPTSPNAGYSPTSPMIDGGIGRYATSPSFSPSSPSFSPTSPM
LRPTSPASPNYSPTSPSYSPASPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLH
GVGATSPSYSPASPSWSPTSPEAYSPTSPSFSKSPGSQQSPTSPSYSPTSPSFSPRTPGP
GASGNQYSPNSPAND
NT seq
5268 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctctacttcacgcactcgagcgctccgctcaagacggtgcaggagattcag
tttggtctcatgtctcccgaggagatcaagagcatgagcgtggcccacattctgtacccg
gagacgatggaggaaggcggcacaaagccgcgcgatggtggcctcaacgatcctctcctc
ggctccatcgaccggcaattcaagtgcaagacgtgcacgcaggcaatgggcgagtgccct
ggccactttggtcacatcgaactggccaagccggtgtaccaccctggcttcatcaagaaa
gtcaagaagatcttggaaattgtctgccacaactgtagcaaggtcctggctgatgaaagc
gatcccgagtttgtcgcagcaatcaatactcgagatgcaaaactccgcttcaagcgggta
tgggccgtctgcaagaagaagcggaggtgtgagaatgacgaccggtcagagaagaacaag
gacgaggagtttgcgcccggcatgaagccagccgtcgtcgaaagccacggcggctgcggc
aatgtgcagcctcaggttcgacaggtcgctctccagctcaaggccgccttcgaggttgtc
caagaggatggtcccaagcggaaagagacggctcccatcaccccagagatggcccatagc
atccttcgccgcatctctgagaaggatctgcgcaacatgggtctcaactcagattacgcc
cgtccggagtggatgatcatcaccgtcctgcccgtgcccccaccaccggtccgtcctagt
atctccatggatggtactggaaccggaatgcgtaacgaagacgacttgacctacaaactt
ggtgatatcattcgcgccaatggcaatgtcaagcaggctatccgtgagggctcccctcag
catatcgccagagatttcgaagagctgctgcaataccacgttgccacctacatggacaac
gacattgctggccagccccgtgcgctgcagaagagtggccgtccggtcaaggccattcgt
gcccgtctcaagggaaaggagggccgcctgagaggcaatctgatgggaaagcgtgttgac
ttttctgctcgtacagtcatcacgggagacgccaacctgtctctgcacgaagtcggtgtt
cctcgcagtattgctcggaccctgacctaccccgagacagtgacgccttacaacattggc
aagttgcatcaactggtcgagaacggtcccaatgagcatcctggagccaagtacgttatc
agatccgacgggacccgtatcgacctgcgacaccacagacgagcggctcaaatttctctc
gagtatggctggaaggttgagcgtcatcttatggacggtgattatatcatcttcaaccgt
caaccctcgcttcacaaggagtccatgatgggtcaccgtgttcgcgtcatgccttactcc
actttccgactcaatctgtcggtgacttctccttacaacgccgatttcgatggtgacgag
atgaaccttcacgtaccgcaaagcgaagagactcgtgcagaagtcaaggagctttgcctg
gttcctaacaacatcgtttcgcctcagaaaaacggcccactgatgggtatcgttcaggac
tcgctcgctggcgcctacaagctctgtcgtcgtgacaccttccttgacaagaatcaggtc
atgaacctcatgctctgggtccctaactgggacggtgtcattccccagcccgccatcctg
aagccgagaccgcgctggaccggcaagcagatcatcagcatggtcatccccaaggagatc
agcctgcacgctcccgaagacaagtctgactctcctctcaaggatgctggcctcctcatt
caggctggtgagcttatgtacggtctcatgaagaagaagaacattggttctgcctctggt
ggtgtgatccatctctgctacaacgagctgggcccagaaggtgccatggcgttccttaac
ggggttcagcaagtggttacctactggctgctgcagaacggccacagcattggtatcggt
gataccattccggataagcagacgattgagaaggtccaggtgcacattgacacccaaaag
gccgaggtcgccaggcttacggccatggctacaaacaacgagttggaagccttgcctggt
atgaacgtccgagcgacctttgagaacaaggtctccatggctcttaacatggctcgtgac
caagctggtactacgacccagaagagtttgaaggactccaacaacgccgtgaccatggcc
gagtccggttcaaagggatcgtccatcaacatttctcagatgacagcgctcgtgggacag
cagattgtcgaaggaaagcgtattccgtttggcttcaaatatcggactctgccccatttc
accaaggatgattactcacccgaggctcgtggttttgtggagaactcgtacctgcgtggc
cttacgccgaccgagttcttcttccacgccatggctggtcgtgaaggtctcattgatacg
gccgtcaagacagccgagacaggttacattcagcgacgtctggtcaaggctctggaagat
ctcaatgctcagtacgatggtacggtgcgcaactctcttggtgatatcattcagttcctc
tacggcgaagacggtctcgacgctatgtgcatcgagaagcagaagcttggcatcttgaag
atgtctgacgaggcgtttgagaagaagtatcgccttgatctggccaacccgccagactgg
ttcagaaaggactacgagtatggcaacgagttgactggtgacaaggcctccatggctctg
ctcgacgaagagtgggatcaacttctggccgaccgccgcgaagtacgggagatcaatcgc
tcaaagatgggcgaggaaatgatgcagcttcctctcaacatcggccgcatgatcgaaacc
gccaagcgcgtcttcaacgtcaaggccaacgaccgaagcaatttgagaccttcggatgtc
attcccgttgtgaggaacgtcatcaacaagctcaagattgtgcgaggcgaggatcagatt
tcgaaagaggcggatactagtgccaccatcctcttcaaagctcttcttcgatctcgactg
gccttcaaagaggtggtcaaggagcatcgcctgaacaagttggcatttgagcatgttctc
ggagagcttcagaaccggtgggaccggtcgtttgtcaaccccggtgaaatggtgggtgtc
ctcgcggctcagtccatcggtgagcctgctacgcagatgactctgaacaccttccacttt
gctggtgtgtcctccaagaacgtcacgctcggtgtgccccgtctcaaggaaatcctcaat
cttgcaaagaacatcaagacgcctagtatggcagtttatctggacactccgttagccaag
caggagcaagcgaagaagctgcgaagtctggtcgagtacaccaatctgcggtctattact
tccgtcactgagatctactacgacccagacgtccagtctacaaccattccggaggatctc
gacatggtcgagtcctacttcttgattcctgacgacagccaagacaccatcgatcagcag
tcgaggtggcttttgcgcatcacgctcgacaggcagaagctgcttgacaaggaaatcaag
atcgacgacgtcgcccaacgcatcaaggaagagtatcccaatgatctggccgtcatcttc
agcgacaacaacgctgacgagcaagtcatccgcatccgtaccattcgccaagacgaaaag
gacgaggacggcgagaagaagattgaagatgacgtgatgctcaagcgactcgaggcccat
ctcctggacactttgacgctgcgaggtgtgcctggcgttgaaagggccttcttgaccaag
ggcactcgcctcgtggaggccgctgacggatctgagcttgcgctcaaggacgatccccga
tgcactcagtggtatctggatactagtggctcagctctccgcgaagtcttggccgtccct
ggagttgatcctacgcgaacctacaccaacgacctgtggcagattatcgaggtgtttggt
atcgaaggtactcgagctgccttggtgaaggagctgacggctgtgctggcatttgacggt
tcctacgtcaaccaccgacacattgccctgctttgtgatgtcatgacgtaccgcggaagt
atttctgccgtgacccgtcacggaatcaaccgagcggacacgggtgccctgatgcgatgt
tcattcgaggagactgtcgagattctcctcgaggcggctgctacgggtgagcttgacgac
tgccgaggcatttctgagaacgtcatgcttggccagatggcccccatgggtactggcaac
tttgatgtctaccttgacccgaagatgctggaaacggtcatctcggacaactctcgcatg
ggcctcatgcctggcatgcccgtcaaggagggagacgtcgaaggtgcagccacgccgtac
gataccggatctcccatgggcgactctggctacctcagcctcaactctcctgctgctgga
aacttctcgcccatccagggtgcaggttcggaaacgcctgctggattcggcaccgagtac
ggcggcggcggctttggtggcatcgggtccatgagcccatactctatgcgtggagcaacc
agcccgttcagcacctcaccgacatcgcctttcagctcgggcatgggtggctactctccg
acgtcgcccaacgcgggatactctccgacatctcccatgatcgatggcggaatcgggcga
tatgcgacttccccgtcattcagcccttcttccccatccttctcgccgacgtcacccatg
ctgcgccctacaagcccagccagtcccaactacagcccgacttcgccaagctactcgccc
gcgtctccttcatcgccgagacactactcgcccacgtcgccggctcaattcaactctccc
acctcgcccagctactcgcccgctagtcccaactacagcccagcctctcccaacctgcac
ggagttggcgctacttctccttcatactctcctgcctctccctcttggtctcccacatct
cccgaggcttactcgcccacgagtcccagcttctccaagagccctgggtcgcaacaatct
cccaccagccccagctactcgcccacttctccctcattttctccccggacccctggcccg
ggagcttctggaaaccaatattcacctaattccccggctaacgactga
DBGET
integrated database retrieval system
