Takifugu rubripes (torafugu): 101063107
Help
Entry
101063107 CDS
T02386
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04510
Focal adhesion
tru04512
ECM-receptor interaction
tru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101063107
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101063107
09142 Cell motility
04820 Cytoskeleton in muscle cells
101063107
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tru00536
]
101063107
Glycosaminoglycan binding proteins [BR:
tru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101063107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
101063107
NCBI-ProteinID:
XP_003961059
Ensembl:
ENSTRUG00000007520
LinkDB
All DBs
Position
1:complement(1512528..1525899)
Genome browser
AA seq
1448 aa
AA seq
DB search
MFSFVDIRLALLLSAAVLLVRGQGEDDSTFGSCTLEGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSECADPIIPEGECCPICPDAEGTQSPVDEEQTMGEKGPTGPAGPPGRDG
LDGRPGPAGPPGPPGPPGLGGNFSPQMGYVDHTKSGGGPAIPGPMGPMGSRGSPGPPGSS
GPQGFTGPAGEPGEPGSPGPMGPRGPSGPPGKNGDDGEAGKSGRPGERGVAGTPGARGIP
GTAGLPGIKGHRGFSGLDGAKGDSGPAGPKGEPGISGENGIPGSMGARGLPGERGRPGAP
GPSGARGNDGNSGPSGPPGPTGPSGPPGFPGGAGAKGETGPQGGRGSDGPAGSRGEPGNP
GPAGAAGAAGVPGSDGSPGAKGAPGAAGIAGSPGFPGSRGPAGAQGAVGAPGPKGNNGDP
GPSGPKGEPGVKGEPGPVGVQGLAGPSGEEGKRGPRGEPGGGGPRGPPGERGAPGGRGFP
GGDGAAGGKGAPGERGSPGPAGAQGATGESGNPGAPGAPGSKGVTGSPGSAGPDGKAGPA
GVPGQDGRSGPPGSGGARGQPGVMGFPGPKGTAGEPGKVGERGAVGVAGAVGAPGKDGDA
GAPGPAGVAGPAGEKGEQGPAGPPGFQGLPGPQGATGETGKPGEQGVAGEVGSPGPSGPR
GDRGFPGERGAPGPAGPTGPRGSPGPSGNDGPKGEPGAAGNPGSAGGPGMQGMPGERGAA
GLPGAKGERGEAGGKGGDGAAGKDGSRGMTGPMGAPGPSGAQGEKGEPGPVGVAGPTGPR
GAPGDRGEAGPAGHAGFAGPPGADGQPGAKGESGETGPKGDAGPPGTTGPAGSSGPQGPA
GPSGPKGATGGAGAPGATGFPGPAGRVGPPGPAGVAGPPGPIGAVGKDGARGARGETGPA
GRPGEAGAVGAPGPSGEKGSPGADGAPGPAGISGPQGIGGQRGTVGIPGQRGERGFPGLA
GPAGEPGKQGSSGPVGERGPPGPAGPPGLSGAPGEPGREGSSGHDGAPGRDGSPGPKGDR
GESGVAGPPGPPGAPGAPGAVGPSGKTGDRGEAGPAGPAGPSGPAGVRGPAGPAGAKGDR
GEAGEAGERGHKGHRGFSGMSGLPGPAGSHGERGPAGASGPAGPRGPAGSSGSPGKDGMN
GLPGVMGPPGPRGRNGEMGAAGPPGPPGLPGPPGAPGGGFDFISQPIQEKAPDPLRGGYY
RADDPNMMHDRDMEVDTTLKTLTQKVEKIRSPDGTQKSPARMCRDLRMCHPEWKSGMYWV
DPNQGSTLDAIKVHCNMETGETCIYPSDSSIPMKNWYLSKNMKEKKHVWFSESMTGGFQF
QYGMAGADSDDVNIQMTFMRLMSNQASQNITYHCKNSIAYMDSTTGNLKKALLLQGSNDV
EIRAEGNSRFTYSVSEDGCTSHTGSWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGV
EVGPVCFL
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgttgctcagcgcagcagtacttttggtc
agaggtcaaggcgaggatgatagcacattcggcagctgcacattagagggacagttgtac
aacgacaaggatgtatggaaacccgagccctgccagatctgcgtctgcgacagtggaacc
gtcatgtgcgacgaggtgatctgtgaggacacatctgagtgcgccgaccccatcatccca
gagggagagtgctgccctatctgtccagatgctgagggtacccagagtccagtagatgag
gagcaaacaatgggcgagaagggccccactggtcccgctggtccccctggcagagatgga
cttgatggacggcctggacctgccggcccacctggaccccctggcccccctggccttggc
ggaaacttctctcctcaaatgggctatgtagaccacactaaatctggcggaggccctgcc
attcccggcccaatgggtcccatgggttctcgtggttctcctggaccccctggatcttct
ggtcctcagggtttcactggacccgctggagagcctggtgagcccggatctcctggtccc
atgggtcctcgtggtccctctggcccccctggaaagaacggagatgatggtgaggccggc
aagtctggtcgcccaggtgagcgtggagttgctggtaccccgggagctcgcggaatcccc
ggaaccgccggactgcccggcatcaagggacacagaggattcagcggtctggatggagct
aagggagacagcggaccagctggtcccaagggagagcctggtatctccggggagaacggc
atccctggatctatgggtgctcgtggtcttcctggtgagagaggccgccctggagctcct
ggcccctctggcgcccgtggtaacgatggcaactccggcccctctggaccccctggacct
actggaccttctggcccccctggattccccggtggtgctggtgctaagggagagactggc
ccccagggaggccgtggtagtgatggacctgcaggatcccgcggtgagcctggtaaccca
ggacccgctggagctgctggagctgctggtgtccctggatctgatggctctcctggtgct
aagggagctcctggtgctgctggtattgctggttctcctggtttccctggtagccgtggt
cctgctggagctcagggtgccgtcggtgctcctggtcccaagggtaacaatggtgaccct
ggtccctccggtcccaagggagagcctggtgtcaagggagagcctggccctgttggagtt
cagggactcgctggaccttctggtgaggaaggaaagagaggaccccgtggagagcctggt
ggtggtggaccccgtggaccccctggagagcgtggtgcccctggtggtcgtggtttccct
ggtggtgatggagctgctggtggcaagggtgcccctggtgagcgtggttcccctggccca
gctggagctcagggagctaccggtgagtctggaaaccctggcgctcctggtgcacctgga
tccaagggtgtgactggtagccctggtagcgctggccccgacggaaaagctggacctgct
ggtgtccctggacaagatggacgctctggacctcctggatctggtggagccagaggacag
cctggagtcatgggattccctggacctaagggcactgctggtgagcccggtaaggttggt
gagagaggtgccgttggtgttgctggcgctgttggtgctcctggtaaggatggagatgct
ggtgctcccggacctgctggtgttgctggacccgcaggagagaagggagagcaaggacct
gctggacctcctggattccagggtctccctggaccccaaggtgctactggtgagactggc
aagcctggtgagcagggtgttgctggtgaggttggatcccctggaccatctggaccaaga
ggagacagaggtttccctggtgagcgtggtgctcctggtcctgctggcccaactggaccc
cgtggatctcctggcccctctggcaacgatggacccaagggagagcctggtgccgctggt
aaccccggtagtgccggaggccctggaatgcagggtatgcctggtgagcgtggagcagct
ggtcttcccggtgcaaagggagagagaggagaggccggtggtaagggaggtgatggtgca
gctggtaaagacggcagccgtggtatgactggtcctatgggagcccctggaccctctggt
gctcagggtgagaagggtgagcctggccccgttggagttgctggacccactggtcctcgt
ggtgcccctggtgatcgtggagaggctggacctgctggacatgctggctttgctggacct
cctggtgctgatggtcagcctggtgccaagggagagagtggtgaaactggacccaaggga
gatgctggtccccctggaaccactggacctgctggttcctctggtcctcagggccccgct
ggtccttctggacccaaaggtgctactggtggtgctggagctcctggtgctactggtttc
cctggacctgctggcagagttggacccccaggcccagctggagttgctggaccccctgga
cccattggagccgtcggcaaagatggcgcaagaggagctcgtggtgagactggtcctgcc
ggtcgccccggtgaggctggtgccgttggtgcccccggaccttctggagagaagggatct
cctggtgctgatggtgcacctggccctgctggtatctctggaccccaaggtattggtgga
cagcgcggtaccgtaggtatcccaggtcagcgtggagagcgtggattccctggtctggct
ggaccagctggtgagcctggaaagcagggatcttctggacctgttggtgagcgtggaccc
cctggacctgctggaccccctggactgagcggtgcccccggagagcctggtcgtgaggga
tcaagtggtcacgatggtgcccctggccgcgatggatctcctggccccaagggagaccgt
ggtgagagtggtgttgctggacctcctggaccccctggtgctcctggagcccctggagct
gttggcccctctggaaagactggtgaccgtggagaggccggtcccgctggtcctgctggc
ccatctggtcctgctggtgtccgtggacctgctggtcctgctggagctaagggagacaga
ggagaggctggtgaggctggagagagaggacacaagggacacagaggattctctggcatg
agcggtctgcccggacctgctggttcccatggagagagaggacctgctggcgcctctgga
cctgctggacctagaggacctgctggatccagtggttctcctggtaaggatggcatgaac
ggtctgcctggagttatgggaccccctggacctcgtggtcgcaacggagagatgggcgct
gctggtccccctggacctcccggactccctggaccccctggagctcccggtggtggattc
gacttcatcagccagcctattcaggagaaggctcccgatcccctccgtggaggctactac
cgcgctgacgaccccaacatgatgcacgaccgtgacatggaggttgacaccaccctcaag
accctgactcagaaggtcgagaagatccgcagccccgacggtacccagaagagccccgct
cgcatgtgccgcgacctgaggatgtgccaccctgagtggaagagcggaatgtactgggtc
gaccccaaccagggatctactctggatgccatcaaggtccactgcaacatggagaccggc
gagacttgcatctaccccagcgactctagcatccccatgaagaactggtacctcagcaag
aacatgaaagagaagaagcacgtctggttcagcgagtccatgaccggtggattccagttc
cagtacggcatggctggagctgattccgacgatgtcaacatccagatgaccttcatgcgc
ctgatgagcaaccaggcctctcagaacatcacataccactgcaagaacagcatcgcctac
atggactccaccaccggaaacctgaagaaggccctgctgctccagggatccaacgacgtc
gagatcagagccgagggcaacagccgcttcacatacagcgtcagcgaggacggctgcacg
tcacacactggctcatggggcaagacagtcatcgactacaagacatctaaaacatcccgc
ctgcccatcattgacattgctcctatggatgttggtgcacctgatcaggagtttggcgtt
gaagttggccctgtctgcttcttgtaa
DBGET
integrated database retrieval system
