Takifugu rubripes (torafugu): 101064455
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Entry
101064455 CDS
T02386
Symbol
ptbp1
Name
(RefSeq) polypyrimidine tract-binding protein 1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
tru
Takifugu rubripes (torafugu)
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101064455 (ptbp1)
03041 Spliceosome [BR:
tru03041
]
101064455 (ptbp1)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
101064455 (ptbp1)
Spliceosome [BR:
tru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
101064455 (ptbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
101064455
NCBI-ProteinID:
XP_003962422
Ensembl:
ENSTRUG00000011360
LinkDB
All DBs
Position
2:complement(4722259..4734485)
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AA seq
575 aa
AA seq
DB search
MDGRLDTDLYPLGSGYVAEIDGVHDISVGTKRGSDELFSSCISNGPYIMNSANGNDTKKF
KGDVRSSGVPSRVVHVRKLPNDINEAEVIGLGLPFGKVTNLLMLKGKNQAFLELNSEECA
QTMVNYYSSVTPYIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMGGMAI
PTDPASIAGAAAQSPVLRVIVENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALIQ
HVDSMTAQHAKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSQP
SLDPQTMAAAFAAPGIISASPYGGAHAFPPAFAIQQTAGLSMPGIPTALASLGVSHGGMA
AAAAAATRLGFTGLTPTAGHNVLLVSNLNPQSVTPHCLFILFGVYGDVMRVKILFNKKEN
ALVQMSDGTQAQLAMSHLNGQRLHGREMRVTFSKHTTVQLPREGHEDQGLTKDYSNSPLH
RFKKPGSKNYSNIFPPSATLHLSNIPPAVVEDDLKRLFASSGATVKAFKFFQKDHKMALI
QMGSVEEAIDCLIKFHNHDLGENHHLRVSFSKSTI
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgcctagacactgacttgtaccctctgggatctggctacgtcgctgaaatt
gacggtgtccatgatatatcagttggcacaaagaggggatccgacgaactgttttcttcc
tgcatatccaacggaccctatatcatgaactcagctaatggcaacgacacaaaaaaattc
aaaggtgacgttcgcagttctggtgttccatcacgtgtggtccatgtccgtaagctgccc
aatgacataaatgaggctgaagtgatcggactgggacttcctttcgggaaggtgacgaat
ctgctgatgctaaaagggaagaaccaggcattcctggaactcaacagtgaggagtgtgct
caaacaatggtgaattactactcttccgtcacgccctacatcagaaaccaccccatttac
atgcagtactccactcacaaggagctcaagaccgacaactctcccaaccaagtgcgtgct
caggcagctctgcaggcagtaaatgctctgcacggaggtgggatgggaggcatggccatc
cccacagacccagctagcatcgcaggtgcagccgctcagagcccggtcctcagagtcatc
gtggagaacctcttttatcctgtcaccctagaagttcttcaccagattttctccaagttc
gggactgtactgaagatcatcaccttcacaaagaacaaccagttccaggctctcattcaa
catgtggacagcatgacagcccagcacgccaaactgtcactggacggtcagaacatctac
aacgcctgctgtaccctgagaattagcttctccaaactcaccagcctcaacgtcaaatac
aacaatgacaaaagccgggattacactcgcccagatctgcccaccgcagactctcagccc
tcccttgacccccagaccatggcagccgcattcgctgctccaggtataatctcagcctct
ccttatggtggcgctcatgcgttcccgccagccttcgccatccagcagactgcagggctg
tccatgcctgggattcccactgccctggcgtctctgggtgtgagccacggtggtatggcc
gctgctgcagcagccgccacccgcctcggcttcacggggctcactcccaccgcaggacac
aacgtcctgctggtgagcaacctcaaccctcagagcgttacgccacactgcctctttatt
cttttcggcgtttatggagatgtgatgagagtcaagatccttttcaataaaaaggagaac
gcgctggtccagatgtctgatggcacccaggctcagctagctatgagccacctgaacggc
caacgccttcacggaagagaaatgcgtgtgacgttttcaaagcacaccacggtgcagctg
cccagagagggccacgaagaccagggcctcacaaaagactacagcaactccccgctgcac
cgcttcaagaagccaggctccaagaactactccaacatcttccccccatctgcgacgctt
cacctctccaacataccgcctgctgtggtggaggatgacctcaagaggctctttgccagc
tcaggagccaccgtcaaggccttcaagttctttcagaaggaccacaagatggccctgatc
cagatgggctctgttgaggaggccatcgactgcctcatcaaattccacaaccacgacctt
ggagagaaccaccaccttcgagtgtccttctccaagtccaccatctga
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