Takifugu rubripes (torafugu): 101065037
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Entry
101065037 CDS
T02386
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03030
DNA replication
tru03410
Base excision repair
tru03420
Nucleotide excision repair
tru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101065037 (lig1)
03410 Base excision repair
101065037 (lig1)
03420 Nucleotide excision repair
101065037 (lig1)
03430 Mismatch repair
101065037 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tru03032
]
101065037 (lig1)
03400 DNA repair and recombination proteins [BR:
tru03400
]
101065037 (lig1)
Enzymes [BR:
tru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101065037 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
101065037 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101065037 (lig1)
DNA replication proteins [BR:
tru03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101065037 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101065037 (lig1)
DNA repair and recombination proteins [BR:
tru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101065037 (lig1)
NER (nucleotide excision repair)
Other NER factors
101065037 (lig1)
MMR (mismatch excision repair)
Other MMR factors
101065037 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
101065037
NCBI-ProteinID:
XP_029687374
LinkDB
All DBs
Position
22:complement(175057..186205)
Genome browser
AA seq
527 aa
AA seq
DB search
MQRSIASFFQPRNKDKKATEEPTKKATKSPLKVQNRVPEADSPIKKVAKRGRHVLDSDDD
DVPAVKEEVTKQADKEVKREKKDGALKADSTPLSPATPASSASPGTPRTPNSLSPSGIVK
RKTARKTFPKRKLDGSRSGSESPKEEEEEEAKEQEEVQRHKRPRVESGLGGGETPSVPME
EGEQEEQVEMAKMQATSPDQEEKEQAESKISDETDLEAEAAKKNERTRKKHDEKRPASAK
ERDTKEEVLKGGMDKEPSKKAPVSSFFAPRKAAVKMEKAETHEGEKKTSAELKPSADEDK
DAKRGTVSGRPDYNPARPNYHPVDHASWTRDQKVPYLAVARTFEKIEEDSGRLRNIETLS
NLFRSVLLLSPDDLLSCVYLCLNQLGPAYQGMELGVGETVLMKAVAQATGRQLDKIKAEA
QERGDLGLVAESSRSNQRMMFQPASLTVGGVFRKLKEIASMTGNSAMNKKIDIIKGLFVA
CRFSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLTPPGQAFFSVG
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcttccttctttcagcccaggaacaaggacaagaaagctacagag
gaacctaccaaaaaagccaccaaaagccccctgaaagtccagaatcgtgttcctgaagct
gattcacccatcaagaaagttgcgaagcgcggtcggcacgtcctcgatagcgatgacgac
gacgtcccggctgtgaaagaggaagtcacgaaacaggcagacaaagaggttaaaagagaa
aagaaggatggggctttaaaggcagattccacccccctctctccagctaccccggcctct
tcagcttcacctgggaccccccgcacacctaactcgctctccccttctgggatcgtcaaa
cgcaaaactgcgaggaagacgttcccaaagaggaagcttgatggcagcaggagtggcagt
gagagtccgaaggaggaggaggaggaggaggccaaggagcaggaggaggtgcagcggcac
aaacgaccccgcgtggagagcggccttggtggtggagaaacccccagcgtacccatggag
gagggagaacaggaagaacaagtggaaatggcaaagatgcaggctaccagcccagatcag
gaggagaaggagcaggcggagagcaagatctccgatgagaccgacctagaagctgaggca
gcaaagaaaaatgaaaggactcggaagaagcatgatgagaaaagacctgcttctgcaaag
gagagagacaccaaggaagaagtcttgaaaggaggaatggataaagagccatcaaagaaa
gctcctgtcagcagcttctttgctcccagaaaagctgctgtgaaaatggagaaagcagaa
acgcatgaaggagagaaaaagacgagtgcagagctgaaaccttcagcggatgaagacaaa
gatgctaaacgtgggacggtctcaggacgcccagactacaacccagccaggcccaactac
catcctgtggaccacgccagctggacacgggaccagaaggtgccgtacctggctgtggcc
cgcacctttgagaagatcgaggaggactccggcaggttgcgcaacatcgagactctgtcg
aacctgtttcgctcagtgctgctgctctctccagatgacctgctgagttgcgtgtacctg
tgtttgaatcagctcggtccagcataccaggggatggagctgggtgttggagagacggtg
ctgatgaaagctgttgctcaagcaacagggcgacagttggacaaaatcaaggcagaagct
caggagagaggagatctgggcctcgtggctgagagttcccgtagcaaccaaagaatgatg
ttccagccggccagtctgacagtcgggggcgtgtttaggaaattaaaggaaattgccagc
atgactggaaactcggcaatgaataagaaaatcgacatcatcaaagggctctttgtggcg
tgccgcttctctgaggctcgctacatcgtcaggtcactggctggcaagctccggatcggc
ctggcagaacagagcgtcctggcggctctgagccaggctgtgtgcctcaccccccctgga
caagcttttttctcagtgggataa
DBGET
integrated database retrieval system
