Takifugu rubripes (torafugu): 101069747
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Entry
101069747 CDS
T02386
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X3
KO
K06823
collagen type XVIII alpha
Organism
tru
Takifugu rubripes (torafugu)
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tru04147
]
101069747
00535 Proteoglycans [BR:
tru00535
]
101069747
00536 Glycosaminoglycan binding proteins [BR:
tru00536
]
101069747
Exosome [BR:
tru04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101069747
Proteoglycans [BR:
tru00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
101069747
Glycosaminoglycan binding proteins [BR:
tru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101069747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF959
Motif
Other DBs
NCBI-GeneID:
101069747
NCBI-ProteinID:
XP_011604710
LinkDB
All DBs
Position
8:complement(9642331..9663261)
Genome browser
AA seq
1601 aa
AA seq
DB search
MSRIQTLAIFLVLCTGTCESWFWSSNQEEKTTESPTEVLITNASTTPAGPTSAAVTPTNA
TKEEEDDDLSGIGEELLDMASGIRKFVEAWNATARNTHEVTEKVDPNRTGNANTSRGEGG
PEGSGSGSGPAADAGSSEESLMIVPNSTSVVGAAQRLSNYTKAPDGGRADASRPPCLPVP
SDWPICSAKRPQSLTLPNVFNHTSVDQVGAVLKEWAWLARKGCHPSAEWFLCLLLAPRCS
APAPLPCRSFCQTLRDSCWASLDNGRLPVECHLLPDVAPGRSHPTCLSVSNWKAESGVSL
LQLIGDLPSGLNRSYGPRGQVSFSFNAKATAGQLALAHVPNPFYRHFSLIFNVRPSSPAA
AVLFSITDGPQKLVYVGVKLSGERAGRQKVQFFYTEPDSEASYEAASFEVPSLANSWTRF
SLSIYEDQVTFYHGCESEPQMVRFERSPDPMELDPEAKIFVGQAGNADADRFRGDMSELK
VVGDPQAAERLCDDEDDSDTASGDFGSGDGGVVKQTESTLKTTPPSFQPLPAPPVTASQR
LTGTIGEKGQKGDRGERGSKGDLGLVGPKGEPGLGTRLSSESGGPNGEKGSKGDKGQKGS
LGAGYAGKKGEPGVPGPPGLPGPPGPAATVVQRGNGSVVQHEPGPIGPPGLPGLIGPVGP
PGSDGLPGDPGEDGKDGPPGPQGVPGTPGNPGSKGQKGDPGEGQPGPRGPPGLPGPPGPG
AGDRQTSTFFDMEGSGFSDMEKLRGAQGPPGPPGLPGPPGIPGTSVALGPNGAIGFGPPG
PPGLDGTPGLPGPPGPPGPRGQPGLVGVKGAQGAPGRVGSPGQTGLAGLPGPMGPAGPPG
PPGPPYRGGVGFGDQELEETTSLPGLAGPPGPQGPPGTAGFPGKPGFPGSNGEKGSEGPR
GPPGIPGIDGFPGQLGEKGDRGEKGERGQPGRDSGLPGPPGPPGPPGQIIYQSSNDYNDV
YWSEGLQGGHGVPGRPGFPGPAGPKGERGDSGPPGYAPKGQKGEPGIIIGPDGSPQYHGG
LAGLPGESGPPGPVGPPGPYGPPGQKGEIGLPGRPGRPGLNGAKGLKGDSGSGSGYAYPG
PPGPPGPPGPPGASGPIDRISGFEDIRRYLPDLKGEKGEQGPPGRVEVSGSNFDINVLKN
EMKGETGSPGLKGEKGEQGSGYYDPRYGGSGYPGQPGPPGPKGDSVIGPPGPQGPPGQPG
RGYDGRPGPPGPPGPPGPAGGSYTGDSWDSRTVSVTGPPGPPGTPGLPGISSGVSLFRTY
DTMAATARRHPEGSLVYVIDQTDLYLRVREGVRQVYLGNYIALPGDENEVAAVEPPPVVL
YSTDSNTPQPESPVQPDPHPPIHHKPQDPHSQQPTHPDPHYHPDPRYPAPTDPRYPSYTE
RINRPDGRSSHTTQERPTYPYHRYPVTTPRRPPVPETPVHRHASGPGLHLIALNAPQTGA
MRGIRGVDYLCFTQAQAIGMKGTFRAFLSSRLQDLSSIVGKRDRDRLPIINLKDEVLFDS
WDAIFNDGRIKDNVPIYSFDGRDILSDGAWPEKMLWHGSTGAGQRHTEDLCDAWRSGDQA
QNGMAAPLHAGSNPLQQRPGRCSSAYAVLCIENSYIGHAKR
NT seq
4806 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatccagaccttggccattttcttggttctctgcacagggacctgtgagtcc
tggttttggtcgtcaaaccaggaagaaaagacaacggagtccccaaccgaggtgctgata
acgaacgccagcaccacgccggcggggcccacgagcgctgccgtgaccccaacgaacgcc
acgaaggaggaggaggatgacgacctgtctgggatcggagaggagctcctcgatatggcc
tccgggatccgtaagtttgttgaggcgtggaacgcgaccgccaggaatacccatgaagtg
acagagaaggtggatcccaaccgcacgggtaatgcaaacacatcgagaggggaggggggg
cccgagggctctgggtctgggtcaggacccgctgctgatgcggggtcaagcgaagagtcg
ctgatgattgttccgaacagtacaagcgttgtcggcgccgctcagcgtctttcaaattac
acgaaagcgcccgacggcggccgcgccgacgcctcccgcccgccttgtctccccgtccct
tctgattggcccatttgctcggccaagcgtcctcagtcgctcacgctgcccaacgttttc
aaccacacctctgtggaccaggtgggggcggtcctaaaggagtgggcgtggctggccagg
aaggggtgtcaccccagtgctgagtggttcctctgtctcctgctggcgcccaggtgctcg
gccccggccccgctgccctgtcgcagcttctgccagacgctgcgggacagctgctgggcg
tccctggataacgggcggctgcctgtggagtgccacctcctgccagatgtggcgcccggg
cgcagccatcccacctgcttgtccgttagtaactggaaagccgagagcggcgtctctctg
ctccagctgatcggggacctgccgtccgggctcaacaggtcctacgggccgagggggcag
gtcagcttcagcttcaatgccaaagcgacggccggtcaactggctctggcccacgtccca
aaccccttctatcgccatttctccctgatcttcaacgtcaggccctcctcccccgccgcc
gccgtcctcttctccatcaccgacgggccgcagaagctcgtgtacgtgggcgtgaagctg
agtggcgagcgggcgggtcgccagaaggtgcagttcttctacaccgagcccgactccgag
gcttcgtacgaagccgccagctttgaggtgccgagcctggcgaactcttggacccgcttt
tctttatccatctatgaggatcaggtgaccttctaccacggctgcgagtcggagccccag
atggtccggttcgaacgctcccctgatcccatggagctggaccccgaggcaaagatcttt
gtgggccaggcaggaaacgctgacgctgacaggttcaggggcgacatgtcggagctgaag
gtggtgggggaccctcaggcggctgaacgtctgtgtgacgatgaggatgattctgacacc
gcctccggagacttcggcagtggcgatggcggcgtggtgaagcagacggaatccacgcta
aagactacccctccttccttccagcctctacctgcaccgccagtcacggcctcacagaga
ctgacaggtaccattggcgaaaaagggcagaaaggcgacagaggagagagaggctcgaag
ggggatcttggccttgtgggaccaaagggagagccgggtttggggactcgtttatcatca
gagagcggaggaccaaatggagaaaaggggtcgaagggagacaaaggtcaaaagggaagt
ttgggtgccggatatgctggtaaaaaaggagaacctggagttcctggtccgcctggcctc
cctggaccccctggtcctgcagcgacggtggttcaacgtgggaatggatctgttgtgcag
catgaacctggacccattggaccaccagggttgccgggtttaattggacctgtaggccca
ccaggatctgatggattacctggggatccaggagaagacgggaaagatggcccccctgga
ccacaaggggtcccaggaactccaggaaatcctggttccaaaggccaaaagggagatcct
ggagaaggtcagccagggcccagaggaccccccggtctaccaggacctcctggacctgga
gctggtgaccgccaaacatcgacattttttgacatggagggctcaggattttcagatatg
gagaaactccggggtgcccaaggtcctccaggccccccaggccttcccgggcccccggga
attcctgggacttcagtggcactcggacccaatggagcaataggttttggacctcctgga
ccaccaggactggacggaactcctggtctccctggtcctcctggtcctccaggtcctcga
ggtcaaccagggctggttggagtaaagggtgctcagggagcgccaggaagggtgggttca
ccaggccagactggactagcaggcctgcctggtcccatgggacctgcaggacccccggga
ccacctggaccaccataccgtggtggagtaggttttggagaccaagaactggaggaaacc
accagtttacctggactcgcaggcccacctggaccacagggccctcctgggactgcaggt
ttccctgggaaaccaggtttcccaggttccaatggagagaaaggatcagagggccctcga
ggacctcctgggataccgggtatcgatggatttcccgggcagctgggtgaaaagggagac
agaggagagaaaggggagaggggtcaaccaggaagagacagtggactacctggacccccg
gggcctcctggacctccgggacaaatcatctaccagtcgtcaaatgattataatgacgtt
tattggagtgaagggttgcagggtggacatggtgttccaggtcgaccaggtttcccaggg
ccagcgggaccaaagggtgagagaggagactcggggcctccaggatatgccccaaaagga
cagaaaggagaacccggcatcatcattgggcctgatgggagccctcagtaccacggtggc
ctggcaggacttccgggtgaaagtggacctcctggacctgtgggacctcctggtccgtac
ggtcctccgggccagaagggagagatcgggcttccggggagaccaggtcgacctggtctc
aacggtgccaaaggcctgaagggagactcaggcagtgggtccggatacgcttaccctggt
cctcctggtccacctggcccccctggaccaccaggagcttctggtcccatcgacagaatc
agtgggtttgaggacatcaggaggtatttaccagacttgaaaggagagaaaggtgaacaa
ggaccaccaggaagagttgaagtatcgggctcaaactttgatatcaacgttttgaagaat
gagatgaaaggtgaaacaggaagtccaggcctgaaaggagagaaaggagaacagggcagt
ggatactatgatcctcgatatggtggatctggataccctggacagccgggacctcctggc
cctaaaggcgactccgtcattggcccaccaggacctcaaggaccacctggtcagccaggc
agaggctacgatggacggccaggacccccagggccacctggaccacctggacctgcggga
ggatcatacactggagactcctgggactcgaggactgtcagtgtcacaggaccaccagga
cctcctggaacaccggggcttcctggaatctcctcaggagtgtcgttgttcaggacctat
gatacgatggcagccactgccagaagacatccggagggttctctggtttatgttatagac
caaacagatctctacctgagggtccgagagggagtccgccaagtctacctggggaactat
atcgctcttcctggagacgagaacgaggtcgctgccgtggaaccgccccctgtggtcctt
tactcaacagactcaaacaccccccagcctgagagccccgtccagcctgatccacatcca
ccgatacaccacaaaccacaagacccacattcccaacaaccaacccacccagatccacac
tatcacccagatccacggtacccagcccccaccgaccccagatatccaagttacacagag
cgcataaatcggccagacggtaggtccagccacaccacgcaggaaaggcccacctacccg
tatcaccgctacccagtcaccacgccacgaagacctcccgttcccgaaaccccagtccac
cgtcacgcttcaggcccggggcttcacctgattgccctgaacgcccctcagaccggcgct
atgcgggggatccgtggtgttgactacctgtgcttcacacaagctcaggccattggaatg
aagggaacgttccgtgccttcctctcatccagactccaggatctttccagcattgtcggt
aaaagggacagagacagacttcccatcatcaacctgaaggatgaggttctgttcgacagc
tgggatgccatttttaacgatggtagaataaaggacaacgttcccatctactcgttcgac
ggcagagacatcctcagcgatggcgcatggccggagaagatgctgtggcacggctccact
ggtgccgggcagaggcacacggaggacctctgcgacgcctggcgttctggtgaccaggcc
cagaacggcatggcggcgcctcttcacgccggcagcaaccccctgcagcagcgccctggc
aggtgctcgagcgcgtacgcagtcctgtgcatcgagaacagctacatcggccacgccaag
agatag
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integrated database retrieval system
