Takifugu rubripes (torafugu): 101071353
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Entry
101071353 CDS
T02386
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101071353 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tru03400
]
101071353 (lig4)
Enzymes [BR:
tru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101071353 (lig4)
DNA repair and recombination proteins [BR:
tru03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101071353 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101071353
NCBI-ProteinID:
XP_003966508
Ensembl:
ENSTRUG00000009984
LinkDB
All DBs
Position
8:complement(5279572..5284133)
Genome browser
AA seq
908 aa
AA seq
DB search
MEGTSRSDAAAEPSVAAQVPFVHLCTTLEKIQKAKLRPDKSKILGDFIGSWRKFHSALHK
ESKTTDSFYPAMRLFVPQFERERMAYGIKESMLAKLYIDVLGLPKNGPEASKLLNYRAPN
ISQGDAGDFASVAYFVLKKRCTSQGNLSVQEVNDFLDSVAINNASKKKDLVKKSLLHLIT
QSSALEQKWLVRMILKDMKLGVSKETVLQVFHPDAPDLYNVNTDLNKVCQQLHDPSVSLS
EVSIELFSAFKPMLAAVANIHTVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNAF
EYTQQFGGSPLQGSLTPYIHNVFNSHVVNCILDGEMMAYNPTTETLTQKGSKFDIKRLMD
DSELQTCFCVFDVLLVNDQKLGKEPLKKRYETLQTVFTPVKGRIHLVSKTDARRMQEVVN
ALNEAIDNREEGIMVKDPSSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGRR
GGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYELGLKLAKHWKVFRKSDPPA
SILCAAEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTDCTLRFPRIEKIREDKEWHECMTL
AELDQFRSKASGKLASRHLHIDDDPQKKKRRVPVKPKKVVGTLEHFKAQDLSGVKKETDM
FEDVEFCILNGTEDHPKSELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLILSDQH
DVVWAAWLLECIDQKDVVPWQPRHMIHMSPSTREHFAKEYDAYGDSYFVDTDEQQLREVF
GRIRSSNVPAAVDVCQVEQRCGWEDLPTSLFRPFKVYVDACSDIGDAESGISASCLDIRA
LEFRFHGGTVVRRLEEGVSHVVVEEETRLLGLRTARRSFRKKFKIVKDSWVTDSIKAGYL
MDDTDYLV
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacgtccagaagtgatgctgctgctgagccgtctgttgctgctcaggttcca
tttgttcacctgtgcaccactttagagaaaatccagaaagccaagctccggccagacaag
tccaagattttaggagatttcattggatcatggaggaagtttcattctgccctccacaaa
gaatccaaaacaacagactctttctacccagctatgcgcctctttgtcccccaatttgag
cgagagcggatggcatatggtattaaagagagtatgttagcgaaactctacattgatgtg
ttaggcctcccaaagaatggccctgaagccagtaagctgttgaactaccgcgcaccgaat
atatctcaaggagacgctggagactttgccagtgtggcatactttgtcctaaagaaacgg
tgcaccagtcaggggaacctgagtgtccaagaagtgaatgacttcttggactctgtggca
attaacaatgcaagcaagaagaaggatcttgtaaaaaagagtctgttgcacctcatcacc
cagagttcagctctagagcaaaaatggctcgtaagaatgattctgaaggacatgaagctc
ggggttagcaaggaaactgtcctccaagtcttccacccagatgcccctgacctctacaat
gtcaacaccgatttgaacaaagtgtgtcagcagctccatgacccctccgtatcccttagc
gaggtctctattgaactcttctcagcctttaagcccatgttggctgctgtggcaaatatc
cacactgtggaaaagcagatgggaaacagccctttttacattcagaccaagctggacggg
gagcgcatccagttgcacaaagatggggacgtgtacaaatacttcagccggaacgcgttt
gagtacacgcaacagttcggaggatctcctctgcagggctcactcacaccttatatccat
aatgtctttaacagccacgtggtcaactgtatactggatggagaaatgatggcgtacaac
ccaaccacagagactttaacgcagaaagggagcaaatttgacatcaagaggctcatggat
gactctgagttgcagacatgcttctgcgtctttgacgtgttgctcgtcaatgaccagaag
ctcggcaaggagcctttaaagaagcgttacgagacacttcagacagttttcacaccagtc
aaaggtagaatccacctggtgtcaaagacagatgccaggagaatgcaggaggtggtgaac
gccctgaatgaggccattgacaaccgagaggaaggcatcatggtgaaggatccttcatcc
atttacaaacctgacaaacgtggggagggctggctgaaaataaagccagagtacgtggat
ggcctgatggacgagcttgacctgctgattgttggtggctactgggggaaagggagacgt
ggagggatgatgtctcacttcttgtgtgctgttgccgaggctccaaaacctggcgagaag
ccctctgttttccacaccctctgccgcatcggctctggctacaccatgaaagagttgtat
gaactcggtttaaaactggccaaacactggaaagtcttccggaaaagcgacccgccggca
tccattttgtgcgcagcggaaaagccagaagtctacatcgagccgtgcaactccgtcatt
attcaggtgaaggcagctgaaatcgttggcagcgacatgtataaaaccgactgcaccttg
cgcttccccaggatcgagaagatccgggaggacaaggaatggcatgagtgcatgactctg
gccgagctggaccagttccgcagcaaggcatcggggaaactggcctcgcggcacctacat
atcgacgacgatccccaaaagaaaaagcgcagggtgccggtcaagccaaagaaggtggtt
gggacactggaacactttaaggcccaagatctctccggagttaagaaggagaccgacatg
tttgaggatgtggagttctgcatcctgaacggcaccgaggatcaccccaagtctgagctg
gaaaagggtgtagccaggtgtggaggtattgtggtccaaaacccaggacgggacacctac
tgcgtgattgctggggttgagaatatgcgtgtgaagaacctgattctgtccgaccagcat
gacgtggtgtgggctgcctggctgttggagtgcatagatcagaaggacgtggtcccgtgg
cagccacgtcacatgatccacatgtccccctccacccgggagcactttgccaaggagtac
gacgcctacggcgacagctacttcgtggacactgacgagcagcagctgcgagaagtgttc
ggccggataaggagctcgaacgtgcccgccgctgttgacgtgtgccaggtagagcagcgc
tgcggctgggaagacctgcccaccagcctgttcagaccgttcaaggtttacgtggacgcg
tgctctgacatcggggatgccgagtcaggcatctctgcgtcctgcctggacatcagagcg
ctggagtttcgcttccacggagggacagtggtgcggaggttagaggagggggtctcgcac
gttgtcgttgaagaggagacgagacttctgggtctgagaaccgccaggcgcagcttccga
aagaaatttaagatcgtgaaagactcatgggtgacggattccattaaagcaggttatctt
atggacgacaccgactacttagtttga
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integrated database retrieval system