Takifugu rubripes (torafugu): 101072935
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Entry
101072935 CDS
T02386
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101072935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101072935
Enzymes [BR:
tru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101072935
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101072935
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101072935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_1
LRR_6
Motif
Other DBs
NCBI-GeneID:
101072935
NCBI-ProteinID:
XP_003970416
Ensembl:
ENSTRUG00000002818
UniProt:
A0A3B5KPW9
LinkDB
All DBs
Position
14:6479782..6490698
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AA seq
556 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLNYLLDNLAGAMKRIPTEQPPARSWISLQEP
ERTWPSALFTVMCYNVLCDKYATRQLYGYCPSWALSWDYRKKNIMQEILGCNADIISLQE
VETEQYYNYFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSAVQKHTV
EFNQLAMANSEGSEPMLNRVMTKDNIGVAMLLEVRKEIIEVSSGKSVHGMDKQLMLIANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKASRSFKLSSGENNNIPLVLCADLNSLPDSGV
VEYLSTGAVDCTHKDFKELRYSDSLTKFNCNGKNGTSNGLITHGFKLKSAYENGLMPYTN
YTFDFKGVIDYVFYSKPHLNVLGILGPLDPHWLVENNVTGCPHPHIPSDHFSLLAQLELL
LNVPSQINGLHMPSRR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatccaaggcggatgtacacaattatgtccagc
gaggaagcagccaacgggaagaagtcgtactgggctgagctcgaaatcagtggcagagtt
cgcagtctgagcacggcgctgtggtctttaacccacctcactgccctgcacctcagcgac
aactcgctgtcccgcatcccaccagacatcgccaaactccacaacctggtgtacttggat
ctgtcatcgaataagatcaggagtctgccggccgagctcggcaacatggtttctctcagg
gagctgcttttaaataacaaccagttgcgggttctgccatttgaactggggaaactattt
cagttacaaacactggggttgaaaggaaacccacttgcacaagaaatcatgagcctctac
caggaaccagatggcacgcggagactgcttaactacttgctagacaatctggcaggggca
atgaaacgcataccaacagagcagcctccggctcggtcatggatttctctccaggaacca
gagcggacttggccgtcagcactgttcactgtgatgtgctacaacgtcctgtgtgataag
tacgccacccgacagctgtacggctactgcccctcctgggctctgagctgggattacagg
aaaaagaacatcatgcaggagatcctcggctgcaacgccgacatcatcagtctgcaggaa
gtggagacggagcagtactacaattacttcttgccggagctgaaggagcagggatacgat
gggttcttcagtccaaagtcccgagccaggaccatgtccgagtcggaccgcaaacacgtg
gacggatgtgcaatcttctacaagacagaaaagttcagcgcggtgcagaagcacaccgtg
gaattcaaccagctggccatggcaaactccgaggggtcggagcccatgctgaaccgggtc
atgaccaaggacaacatcggtgtcgctatgctgctggaggtccggaaagagattatcgaa
gtctcctctggaaagtcggtgcacggcatggataaacagctaatgctgatagccaacgcc
cacatgcactgggaccccgagtactcggacgtgaagctggtccagaccatgatgttcctg
tcggaggtgaagaacatcgtggacaaggcctcgcgcagtttcaagttgtcctctggagaa
aacaacaacattccgctggtgctgtgtgctgacctcaactccttaccggactctggtgtg
gtggaatacctcagcaccggagcagtggactgcacccacaaggatttcaaggagctccga
tacagcgatagtctgaccaaattcaactgcaacggcaagaacggcacatctaacggcttg
atcacgcacggcttcaagctgaagagcgcgtacgagaacggcctaatgccttacaccaac
tacacctttgacttcaagggtgtcatcgactacgttttctactccaagcctcatctgaac
gtgttgggtatcttggggcctctggacccccactggctcgtagagaacaatgtcactggc
tgcccgcatccccacatcccatctgaccacttctccctgttagcccagctggagctgctc
ctcaacgtgccctcccagatcaatgggctccacatgccttcacgcaggtag
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