Takifugu rubripes (torafugu): 115251788
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Entry
115251788 CDS
T02386
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04510
Focal adhesion
tru04512
ECM-receptor interaction
tru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115251788
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115251788
09142 Cell motility
04820 Cytoskeleton in muscle cells
115251788
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tru00535
]
115251788
Proteoglycans [BR:
tru00535
]
Extracellular matrix (ECM) proteoglycans
Others
115251788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
115251788
NCBI-ProteinID:
XP_029701245
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All DBs
Position
12:complement(6323642..6338384)
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AA seq
946 aa
AA seq
DB search
MAPHGSRKQHWHLSKWAHPRLCVALLSLLLAPTLGQLDFNRLDGDSVCPPMRSGQDDLPG
FDLITQFQLDVIPLKGVRKVDGSTSLQVAYRLDREANFQIPTMLNFPRGFPDEYSFMVTF
RMIKSTVSKVWNVWQIVDEEGNKQAGLRLNGDQQALEYFLIDAEGNLQTVTFPGLSVLFN
TRWHKVMIGVERNQVTLYVDCQPVDMKPIKGKGPINTEGDTLIGRLDADPDASVVFELQW
MLIHCDPKRAQRESCNELPATEMYANAEPEKLLQGPPGPAGPEGPRGSAGENGRDGRDGL
PGPPGSPGIPGSKGEAGEIGLPGQRGLAGLPGPPGSSGLMGPRGPVGERGLPGFPGPPGP
PGPASEGPAGPPGKPGIPGDEGNIGPEGPAGPRGAAGIAGPPGPPGPPGPVGPPGASSEG
SGEACPAACPAGPQGLPGIPGMKGHKGLAGEPGQDGKAGEKGDAGAAGLQGPPGRMGDDG
QRGPIGFPGTPGEKGDRGPPGFNGVPGPTGPPGAPGVEGIRGRQGLEGPKGDDGAVGPQG
EQGPKGDKGDVGEPGADGLDGIPGADGAKGEAGTPGAVGIRGIVGIPGLPGKLGAAGPTG
EKGDTGADGPVGPVGLPGKAGEPGDPGEDGKPGDKGATGETGKQGPVGPAGPPGIIGEKG
DKGDTGAKGIKGHTGLKGDQGPMGPVGPKGNQGDQGETGDIGVKGDQGPPGVSGIKGEPG
EKGNRGSTGEMGQPGQPGHEGLAGPAGTRGLEGETGPPGSPGPRGLPGPKVSDEKLREMC
SAVVEEQLAEFMKELLKKPAAIGAPGTRGLAGPPGPPGAAGEAGAVGPPGPAGPKGHPGF
FGIPGAPGQKGDHGVKGDKGDNGENGVGIKGSAGAPGAPGAPGAPGIGKDGQRGERGETG
TPGIPGASGPRGPSGPPGLCDPSTCLSRIPPLYMFGGKKSPSYKNP
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggccccacacggctccagaaagcaacattggcatctatcaaagtgggcgcatccccgc
ctgtgcgtggctctgttgtccctcctcctggctccaacacttggacaactggacttcaac
cgtttggatggagattccgtctgcccaccaatgagaagcggacaagacgaccttccgggt
tttgatctgataacccagttccagctggatgtgatccccctgaaaggtgtgcggaaagtg
gacggctccacctccctccaggtggcgtaccgcctggacagggaggccaacttccaaatt
ccaaccatgttgaactttcctcgtggatttcctgatgagtactccttcatggtaactttc
cgcatgatcaaaagcacagtgagcaaagtgtggaacgtctggcaaatagtggatgaggag
ggcaacaaacaagccgggctgaggctgaacggtgaccagcaggccctggagtacttcctg
atagacgctgagggcaatttgcagaccgtcactttcccgggcctctccgtgctcttcaac
accaggtggcacaaggtgatgatcggagtggagcgcaaccaggtcaccctttatgtggac
tgccagcccgtggacatgaagcccatcaaaggcaaaggccccatcaacacggagggagac
accctgattggcaggctggacgctgaccctgacgcctccgtcgtgtttgagctgcagtgg
atgttgattcactgcgacccgaagagagcccagagagaaagctgcaacgagctgcccgcc
actgagatgtatgccaatgctgagcctgaaaaattacttcaaggcccccctgggcccgct
ggaccagagggtcccagagggtctgcaggagaaaatggcagagatggaagagatggtctt
cctggtcctcctggcagtccaggtattcctggcagcaaaggggaggcaggagagatcggt
cttcctggacaaagaggcctggccggtcttccaggacctccaggctcttctggtctaatg
ggccccagaggacccgtaggagagagaggtcttcctggctttcctggccctccaggtcct
cctggcccagcctctgaaggacctgctggacccccaggaaaaccaggaatcccaggggac
gaaggaaacatcggcccagagggtccagctggacccagaggagcagctggaattgcaggc
ccacccggtcctcctggtccacctgggcctgtggggcctcctggtgccagcagtgaggga
agtggggaagcttgtcctgctgcctgtcccgcgggccctcaggggttgccggggatacct
ggaatgaagggacacaaagggctggctggtgagcctggtcaagatgggaaggctggagag
aagggggatgccggggcagcgggccttcaggggccgccgggacgcatgggagatgatgga
caaagaggacccatcggattccccggaacgccaggagaaaagggagacagaggtcctcct
ggttttaatggtgtcccaggacccaccggcccacctggagctccaggtgtggagggaata
cgtggacgtcagggactggagggaccaaagggtgacgatggagctgttgggcctcaggga
gaacaaggtccaaaaggagacaaaggagatgttggagaacctggtgcggatggactggac
ggaatacctggtgctgatggagccaagggagaggctggtactcctggagctgttggcatc
agagggattgtggggattccggggctgccaggaaagctgggagcagccggacccactggt
gaaaagggtgacaccggtgcagacggacctgttgggccagttggacttcctggaaaagcg
ggcgaacctggagaccctggagaagacggaaaacctggagacaaaggagcaacgggtgaa
acaggaaaacaaggcccagtgggccctgctggacctccaggcataataggtgaaaaggga
gataaaggtgacactggcgccaaaggaatcaaaggtcatactgggctgaaaggtgatcag
gggccaatgggaccagttggaccaaaaggaaatcagggggatcaaggtgagacaggagac
atcggggtcaaaggagaccagggacctcctggagtttctggaatcaaaggagagccagga
gagaaaggcaacaggggatcaacaggagaaatggggcaacccggccagccaggacacgag
ggtttggctggtccagccggaactcgaggtctagagggagaaacaggccccccaggatca
ccaggccccagaggacttcctggcccaaaagtaagtgatgagaaactccgggagatgtgc
tctgctgtcgttgaagaacaactggcagagtttatgaaagagcttctgaagaaaccagca
gcaatcggtgcccctggcactcgtggactagctggacctcccggcccccctggagcagct
ggagaggcaggtgcagtgggaccccctggaccagcaggtcccaagggccacccaggtttc
tttggaattcctggggcacctggtcagaaaggtgatcatggggtgaaaggggacaaagga
gacaatggagagaacggagtgggaattaaaggaagcgcaggggcaccgggagcaccaggt
gcaccaggcgctcctgggattggcaaggatggccaaagaggagaacgtggggagacagga
acccccggcatcccaggggcgtccggtccgaggggcccctctggaccacccggactctgt
gacccatcaacctgtttaagcagaattcctcctctttacatgttcggcgggaagaagtct
ccaagctacaaaaatccctga
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