Tropicibacter oceani: QF118_13530
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Entry
QF118_13530 CDS
T09169
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
try
Tropicibacter oceani
Pathway
try03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
try00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QF118_13530 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
try03400
]
QF118_13530 (mfd)
Enzymes [BR:
try01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QF118_13530 (mfd)
DNA repair and recombination proteins [BR:
try03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QF118_13530 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
AAA_30
MFD_D3
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WGW02948
LinkDB
All DBs
Position
complement(2814205..2817669)
Genome browser
AA seq
1154 aa
AA seq
DB search
MAQNTITIGGAPEGFDATLLLKEMAKAAGPVIHVARDDKRLASMRDALAFFAPDVPVLSF
PAWDCLPYDRVSPNADISAARMATLAGLVHGMPGQYILLTTLAAATQRIPAREVLQEAAF
TARVGDRVDEEALRMFLVRMGFSQAPTVTEPGDYAIRGGIVDIFPPGHGGPVRLDFFGDV
LDGARRFDAATQRTTEALEVVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEAV
SAGRKHQGIEHWLPFFHARLETLFDYLPGAPVVMDDQLTASRLARWDSIADQYETRRLAM
AQKKTMGSSVYKPIPPDQLYLDDAGWLTALGDRRAVQLHPLPQASGPGVVDAGGRIGRSF
APERQQETLSLFGALASHVKARIKDGPVLIASYSEGARERLTGLIEDEGLAEAIPIQNGT
RLGKRGLHLAVWALEAGFEAPWMDGRITVISEQDVLGDRLIRQPRKKRRAENFLTEHQSL
SPGDLVVHVDHGIGRYMGLEVITAAGAAHECISLEYAESAKLYLPVENIELLSKYGHEEG
LLDRLGGGAWQAKKAKLKERIREMADRLIRIAAERALRKAPVMDPPPGAYESFAARFPYQ
ETDDQLSAISDVMTDMHSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTL
LARQHYKSFAERFRGFPLQVAPLSRFVGTKQANLTREGISKGTVDIAIGTHALLAKGIRF
NNLGLLIIDEEQHFGVQHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPP
VDRLAIRTYISEFDPVTIREALLREHYRGGQSFYVVPRITDLPEIEAFLKEQMPEVTYVV
AHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLSQLYQIR
GRVGRSKTRAYAYMTTKPRAKLTTTAEKRLRVLGSLDTLGAGFNLASQDLDIRGAGNLLG
EEQSGQMRDVGYELYQSMLEEAISKIRSGQMEGLTEDDGQWAPQINLGVPVLIPEDYVPD
LDVRLGLYRRLSSLTTKVELEGFAAELIDRFGKLPREVNTLLLVVRIKAMCKRAGIAKLD
GGPKGATVQFHNDKFARPEGLVQFINAQNGHAKVKDNKIVVRRDWSTEKAKIQGAFAIAR
DLAEAAGTIKKRQG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcacagaacacgatcaccatcggcggcgcccccgagggctttgacgcaacccttttg
ctgaaagagatggccaaggcggcaggcccggtcatccatgtcgcccgcgatgacaagcgg
ctggcctcgatgcgcgatgcgctggcgttttttgcgcccgatgtgcctgtgctgtccttt
ccggcctgggattgcctgccctatgaccgcgtttcccccaacgccgacatttccgccgcg
cgcatggcgacgctggcggggttggtgcacgggatgccggggcaatacatcctgctgacc
acgcttgccgccgccacccagcgcatccctgcgcgcgaggtgctgcaagaggcagccttt
accgcgcgcgtcggtgaccgcgtcgacgaagaggcgctgcgcatgttcctggtgcgcatg
gggttcagccaggcccccacggtgaccgaaccgggcgactatgccattcgcggcggcatc
gtcgatattttcccgccggggcatggcgggcctgtgcggctggatttctttggggatgtg
ctggacggcgcgcgccgctttgacgccgcgacccagcgcaccaccgaggcgctagaagtg
gtcgaactggcccccgtgtccgaggtgatcctggacgaagcggcgatcacccggttccgg
cagaattaccgcatcgaatttggcgccgccggcaccgacgatccgctgtacgaggcggtc
agcgccgggcgcaagcatcagggcatcgaacattggctgccgttcttccatgcgcggctg
gaaaccctgttcgactatctgcccggcgcgccggtggtgatggacgaccagctgacggcc
tcgcggctggcgcgctgggacagcattgccgaccaatacgaaacccggcgccttgccatg
gcgcagaaaaagacgatgggcagctcggtttacaagccgatcccgcccgatcagctgtat
cttgacgatgcgggctggctgacggcgctgggggaccgccgcgcggtgcagctgcacccg
ctgccgcaggccagcgggccgggtgtggtggacgcgggcgggcgcatcgggcgcagcttt
gcccccgaacgccagcaggaaaccctgagccttttcggggctttggcctcgcacgttaaa
gcaaggataaaagacggcccggtgctgatcgcctcctactccgaaggcgcgcgcgaacgc
ctgaccgggttgatcgaggacgaaggcctggccgaggcgatcccgatccagaacggcacc
cggctgggcaagcggggcttgcacctggcggtctgggcgcttgaggcggggttcgaggca
ccctggatggatggccggatcaccgtcatttccgaacaggacgtgctgggcgatcgcctg
atccgccaaccgcgcaagaaacgccgcgccgaaaacttcctgaccgaacatcaaagcctg
tcgcccggcgacctggtggttcatgtcgaccacggcatcggccgctacatggggctcgag
gtgatcaccgcggccggggctgcgcatgaatgcatcagcctggaatatgccgaaagcgcc
aagctgtacctgccggtcgagaacatcgaactgctgagcaaatacggccacgaagagggg
ctgcttgaccgccttggcggcggcgcatggcaagccaagaaggccaagctcaaggaacgt
atccgcgagatggcggatcgcctgatccgcatcgccgccgaacgcgccctgcgcaaggcc
ccggtgatggacccgccccccggtgcctatgaaagctttgccgcgcgctttccctatcag
gaaaccgatgaccagctgtcggccatcagcgacgtgatgaccgatatgcactctggccag
ccgatggatcgcttgatctgcggcgacgtcggctttggcaagaccgaggtcgccatgcgc
gcggcctttgtcgccgccatgtccggcgttcaggtggcggtgatcgcgccgacgaccctg
ctggcgcgtcagcactacaaaagctttgccgaacggttccggggctttcccctgcaagtc
gcgccgctgtcgcggtttgtcggcacgaaacaggccaatctgacgcgcgaggggatttcg
aaggggaccgtcgacattgccatcggcacccatgcgctgctggccaagggcatccgcttc
aacaaccttggtctgttgatcatcgacgaggaacagcactttggcgtgcagcacaaggaa
cgtctgaaacagctgcgcagcgacatccacgttctgaccctgactgccacgccgatcccg
cgcaccttgcagctgtcgctgaccggcgtgcgcgacctgtcgatcatcggcacgccgccc
gtcgaccgcctggcgatccgcacttatatcagcgaattcgatcccgtcacgatccgcgag
gcgctgctgcgcgaacattatcgcggcgggcagtcgttttacgtggtgccacgcatcacc
gacctgccggaaatcgaggcctttctgaaagagcagatgcccgaggtgacctatgttgtc
gcccatggccagatggcggcgggcgaactggacgaccggatgaacgccttttacgacggc
aaatacgacgtgcttctggcgacgacgatcgtcgaatccggattggatattcccacggcc
aacaccatggtcgtgcaccgcgccgatatgttcgggctaagccagctgtaccagatccgc
ggccgtgtcgggcgatcgaaaacccgcgcctatgcctatatgaccacgaaaccgcgcgcc
aagctgaccacgaccgccgaaaagcgtctgcgcgttctgggcagcctggacacgctgggg
gcagggttcaaccttgccagccaggacctggacattcgcggggcgggcaaccttttgggc
gaagaacagtccggccagatgcgcgatgtgggctatgaactgtaccaatccatgctggaa
gaggcgatctccaagatccggtcgggccagatggaagggttgaccgaggacgatggccaa
tgggcgccccagatcaacctgggcgtgccggtgctgatccccgaggactatgtccccgat
ctggacgtgcggttggggctgtatcgacgcctgtcgtcactgacgaccaaggtggaactg
gaaggctttgccgccgagttgatcgaccgttttggcaagctgccgcgcgaagtgaacacc
ctgctgctggtggtgcggatcaaggccatgtgcaaacgcgccgggattgccaagctggac
ggcggccccaagggggcgactgtgcagttccacaacgacaaattcgcgcgccccgaaggg
ctggtgcagttcatcaacgcgcagaatggtcatgccaaggtcaaggacaacaagattgtc
gtgcgccgcgactggtcgacggaaaaggccaagatccagggcgcctttgccatcgcaagg
gacctggccgaggcggccgggacgatcaagaaacgtcaggggtag
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