Terriglobus saanensis: AciPR4_1657
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Entry
AciPR4_1657 CDS
T01408
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tsa
Terriglobus saanensis
Pathway
tsa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AciPR4_1657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsa03400
]
AciPR4_1657
Enzymes [BR:
tsa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AciPR4_1657
DNA repair and recombination proteins [BR:
tsa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AciPR4_1657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADV82464
UniProt:
E8V3A7
LinkDB
All DBs
Position
complement(2005682..2008555)
Genome browser
AA seq
957 aa
AA seq
DB search
MKMATAKKAPAKKSATKKTATEKAAKKVSAKAAVKSASPKTAVKKAAAKKAVPYADAGDQ
IDTQLARYRSMRNFGVTAEPSGGSKSSKLKSDAFPFVIQKHAASHLHYDFRLGWNGVLKS
WAVAKGPSYFTGDRRLAVQVEDHPMEYGGFEGIIPKGQYGGGTVMVWDQGTWEPHVDVDE
GLSKGTLKFAMNGTKMKGNWTLVRMNNMSGNKPNWLLIKEHDEFERTKDDPCVTAEEPNS
VVTGRSLEQIAAAETHVWQSNRTKNAGQAWFRNDDTQVGSDQTEAPETEAVVKAAPKEDK
KKASEKVIDLKAKLAPLPKEKLPDFIAPQLASHADTPPEHGDWLHELKLDGYRIQARKQG
DKIQLLTRTGLDWTHRMKPVAEALRSLKAKDALVDGEVVVLDESGISSFAKLQASFEQGE
KHPMTYFVFDLLHLDAADTRKLPLRERKSLLTAILPSSTEIQMSEHLHLDGGSVFQHACE
LHAEGIISKRADAPYTPGRNASWVKSKCVREQEFVIGGFTLPSNDTYGIGSLLLGYYRDG
KLIYAGRTGTGFTQKIHRMLRDKLEGLRTKSVTFDQIPAVAKRDANWVKPELLAQVRFAT
WTADDLVRQASYLGLREDKLAADVRREEATVAPKPRSARVSVKVPSASIAAKVAPAKAKK
AKSEDAPRTTVPVRLTHPEKILDETTGITKLQLAEYYWAIAEHMLPHIEDRPLSLVRCPE
GSGKPCFFQKHTNHMLPPGIGSVMVPNKKTGEPESYITLNTAEALAGLAQMGVLEVHPWG
SKNSDLEHPDRIIIDLDPDEAITWKQLSDSAESVRNGLETIGLKSFLKTTGGKGLHVVIP
MTPNHDWTQVKAWSHAFAQAFEKEQPDLYLTKMTKSARKGKIYIDYLRNERGATAVAPFS
PRARPGATVSVPLAWKELASPKHPAFSIQDFENWKARLKSDPWKNMQGIKQTLPGLS
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgaagatggcgactgcaaaaaaggccccggcaaagaagtctgccacaaagaaaaccgca
acggaaaaagcggcgaagaaggtctctgcaaaggcggcggtcaagtctgcgtccccaaaa
accgccgtgaagaaagcggcggcaaagaaagccgttccttacgctgacgcgggcgatcag
atcgacactcagctagctcgctatcgctccatgcggaattttggtgtcacggcggaaccg
agcggaggttcgaaatcttccaagctgaagagcgacgctttccccttcgtcatccagaaa
cacgccgcctcccatcttcactatgactttcgtcttggctggaatggtgtgctgaaaagc
tgggctgtcgctaaaggaccgagctacttcaccggcgatcgccggcttgccgtgcaggtg
gaagatcaccccatggagtacggcggctttgaaggcatcatccccaaagggcagtacggc
ggcgggacggttatggtctgggaccagggcacatgggagccgcatgtcgatgtggacgaa
ggtctgtccaaaggtaccctgaagttcgctatgaacggcaccaagatgaagggcaactgg
accctggtccgcatgaacaacatgtctgggaacaaacccaactggctgttgattaaagaa
catgacgagttcgaacgcaccaaggacgatccctgcgtcacggcggaggaaccgaactcc
gtggtcacagggaggtcgctcgaacagattgccgccgccgaaacgcacgtatggcagtcg
aaccgtacgaagaacgcgggccaggcatggttccgcaacgacgacacgcaggtgggctcc
gaccaaacagaagcaccagagactgaagccgttgtaaaagctgcccctaaagaagataaa
aaaaaagcctcggaaaaggttattgatctcaaagccaagttagctcctcttccaaaggaa
aaactgcctgacttcatcgcgcctcagctggcctctcatgccgatacgccaccggaacat
ggcgattggctgcatgagcttaagcttgatggttaccgtattcaggcacgcaagcaggga
gacaagatccaactgctcacgcgcaccggtctggactggacgcatcgcatgaagcctgtg
gctgaagctctgcgaagtctcaaagctaaagatgcgcttgtcgatggcgaagtcgtcgtg
ctggatgagagcggcatctccagcttcgcaaagctacaggcctccttcgaacagggagag
aagcatccgatgacgtactttgtcttcgacctgctccatctggacgcagccgacacgcgc
aagctgccactcagagagcgcaagtcgctcctcacagcgatccttccctcctccactgaa
attcagatgagcgaacatctccaccttgacggagggtccgttttccaacacgcctgtgag
ctgcacgctgaaggcatcatctccaagcgcgcagatgcgccatacactcccggacgcaac
gcgagctgggtcaaatcgaagtgtgtccgcgagcaagaattcgttattgggggcttcacg
cttccctccaacgatacttacgggatcggttcccttttgctgggctactatcgcgacgga
aaactgatctatgcagggcgcaccggtacggggttcacccagaagatccatcgcatgctg
cgcgacaagcttgagggtcttcgcacaaaatccgtaaccttcgatcagatcccagccgtg
gccaagcgcgatgcgaactgggtcaaaccggaactccttgcgcaggtccgctttgccaca
tggactgcggacgatcttgttcgccaagcctcgtaccttggcctccgcgaagacaagctc
gccgctgacgtccgccgcgaagaagccaccgtggctcctaagcccagatcggcacgagtc
tccgtgaaagttccgagtgcgagcatcgccgccaaggtcgctcctgcaaaggccaagaag
gctaaatcggaagatgcaccacgcaccacggtgccggttcgcctgacgcatccagagaag
atcctggacgagaccacgggaatcaccaagcttcagctggcggaatactactgggccatt
gcggagcacatgcttccgcacattgaagacaggccactttcgctcgttcgctgcccggaa
ggaagcggtaagccgtgtttctttcaaaagcacaccaaccacatgcttccacccgggatc
gggagcgtgatggttcccaacaagaagaccggggaaccggagtcgtacatcacactcaat
actgcggaagcactcgcgggtctggcccagatgggcgtgctcgaagtccatccctgggga
tccaaaaactcggatctggaacatcccgaccggatcattatcgacctggatccggacgaa
gccattacgtggaagcagctctccgatagcgcggagagcgttcgcaacggtctggaaacg
atcggcttgaagagctttctcaaaaccaccggaggcaagggccttcacgtcgtcattccc
atgacgccgaaccatgactggacacaggtaaaagcttggtcccacgccttcgcgcaagcc
ttcgagaaagaacaaccggacctctacctgaccaagatgaccaagtccgcgcgcaaggga
aagatctacatcgactaccttcgcaacgaacgcggcgctaccgccgtggcccccttctct
ccacgagctcgtccgggcgctaccgtctctgttcctttggcatggaaagagcttgcttcg
cccaagcatccggctttcagcattcaggattttgagaactggaaggcgcgtttgaagtcc
gatccgtggaagaacatgcaagggatcaagcagacgcttccaggactttcttag
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