Tritonibacter scottomollicae: R1T40_01270
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Entry
R1T40_01270 CDS
T09466
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
tsco
Tritonibacter scottomollicae
Pathway
tsco03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tsco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
R1T40_01270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsco03400
]
R1T40_01270
Enzymes [BR:
tsco01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
R1T40_01270
DNA repair and recombination proteins [BR:
tsco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
R1T40_01270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
WOI33414
LinkDB
All DBs
Position
complement(114868..116271)
Genome browser
AA seq
467 aa
AA seq
DB search
MIQVDLPVLGRAKAWREAARRLASHRIAPEEVDWQGGTLFGGEPIPAADGPRDLRVPKSF
VQLSGSVICHTDPEAPALLYQALWRHQKDRRALGNPADPLTRRLDRLAKAVGRDIHKMHA
FVRFRELSTGGARRRFAAWFEPDHRIVEAAAPFFARRFADMDWLIATPFGTARFSDGQLG
FDLPGPRPDLPEDASEALWTTYFTNIFNPARVKIGAMKSEMPVKYWKNLPETRAIPAMLQ
DAEARVQRMRDALPTEPPKRAARIAAMPATLDQARAGAETCTRCDLCAPRRMVWGEGPAD
APLMIVGEAPGDHEDQKALPFVGPAGQLLRAAMTEAGCPPSYLTNAVKHFKFTQRGKQRL
HESPTRGEIDHCRWWLDQERRLIRPRLTVALGASAAFALTGHHAALTSRRGTLEPAIRGG
DVLITWHPAAILRARSPGAEMRAELAADLSHAAELARERMGARSVEA
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgatccaggtcgacctgcccgttctgggacgcgcaaaggcgtggcgcgaggccgcccgg
cgtctcgccagccacaggattgccccggaggaggtcgactggcagggcggcacgctcttt
ggcggtgaacccattcccgctgcggacggcccgcgcgatcttcgcgtgcccaagagcttt
gttcagctttcaggcagcgtcatctgccataccgacccggaggcgcccgccctgctgtat
caggcgctttggcggcatcaaaaggaccggcgcgcgctagggaaccccgccgatcctctg
acccgtcgccttgaccggctggcaaaggccgtggggcgcgacattcacaagatgcacgcc
ttcgtccggttccgcgaattgtccacgggcggcgcgcgccgccgcttcgccgcgtggttc
gagccagaccaccgtatcgtagaggccgctgctcccttcttcgcccgccgcttcgccgat
atggactggctgattgcgacgccgttcggcaccgcgcggttttcagacggccagcttggt
tttgacctcccggggccgcgcccggatctgccggaggacgcgtcagaggcactctggacg
acgtatttcaccaatatattcaacccggcgcgggtaaagattggcgcgatgaaatccgaa
atgccggtgaagtactggaaaaacctccccgagacccgcgcgatcccggccatgctgcaa
gacgccgaagcgcgcgtgcagcggatgcgggacgcgctgccgacagagccgccgaaacgc
gcggcgcggatcgcagcaatgcctgcaacgctagatcaggcgcgtgcgggggccgagacg
tgtacacgatgcgacctttgcgcgccgcggcggatggtctggggcgaagggcccgccgat
gcacccctgatgatcgtcggcgaagcaccgggagatcacgaggaccagaaagccctgccc
tttgtcggcccggctggccagctcttgcgcgccgcgatgacagaggccggatgcccgccc
tcttatctgaccaacgccgtgaaacacttcaagtttacgcagcggggcaagcagcggctg
cacgaaagcccgacgcgcggcgagatagaccattgccgctggtggctggaccaggaacga
cggctgatccggccccggcttaccgtcgcgctcggcgcgagcgccgcatttgcactgacc
gggcatcacgcggcgctgacgtcgcgacgtggcacgctggaaccggcgatccgtggcggt
gacgtcctcatcacctggcatcccgcagcgatcctgcgcgcacgatcaccgggcgcggag
atgcgcgccgaactggcggctgatctgagccatgctgcagaactcgcaagggaacgaatg
ggcgcgcggagcgttgaggcgtag
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integrated database retrieval system
