KEGG   Thermococcus sibiricus: TSIB_0885
Entry
TSIB_0885         CDS       T00928                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tsi  Thermococcus sibiricus
Pathway
tsi03030  DNA replication
tsi03410  Base excision repair
tsi03420  Nucleotide excision repair
tsi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tsi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TSIB_0885
   03410 Base excision repair
    TSIB_0885
   03420 Nucleotide excision repair
    TSIB_0885
   03430 Mismatch repair
    TSIB_0885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tsi03032]
    TSIB_0885
   03400 DNA repair and recombination proteins [BR:tsi03400]
    TSIB_0885
Enzymes [BR:tsi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TSIB_0885
    6.5.1.6  DNA ligase (ATP or NAD+)
     TSIB_0885
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TSIB_0885
DNA replication proteins [BR:tsi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TSIB_0885
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TSIB_0885
DNA repair and recombination proteins [BR:tsi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TSIB_0885
   NER (nucleotide excision repair)
    Other NER factors
     TSIB_0885
   MMR (mismatch excision repair)
    Other MMR factors
     TSIB_0885
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase FeS_assembly_P mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: ACS89944
UniProt: C6A2U9
Structure
LinkDB
Position
801708..803390
AA seq 560 aa
MLYKELVELYKRLEKTTLKTLKTKFVSDFLKSVEKPELLEVIPYLILGKVFPDWDERELG
IGEKLLIKAVSMATGINSEEIENSVRDTGDLGESIALALNKRKQKSFFSQPLTIERVYNT
LVKIAEASGAGSQDRKLKYLANLFMDASPDEGKYLARTVLGIMRTGVAEGLLRDALADAF
KVRVELVERAYMLTSDFGFVAKVAKLEGDEGLAKVKIQVGKPIKPMLAQMAANVREALVE
MGGEAEFEIKYDGARVQVHKNGNKVLIYSRRLENVTKSIPEVVERVKEALKPEKVIVEGE
LVAVEETGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDILYVDGQNMIDTPFMERRK
VLESVVNSNEWIKSAENLITKSPEEAEAFYHKALDLGHEGLMAKRLDSTYEPGNRGKKWL
KIKPTMENLDLVVLGAEWGEGRRSGVLSSFLLGAYDPVKGDFVPVGKVGSGFTDEDLVEF
TKMLKPLIKKEHGKEVELEPKVVIEVAYQEIQKSPKYESGFALRFPRYIALREDKGPEDA
DTVQRLAELYQFQERLKGGR
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgctttataaggaactggttgaattatataaaagacttgaaaaaactacacttaaaact
cttaaaacaaagtttgtatctgatttcttgaagtcagtcgaaaaacctgaacttctggag
gtaatcccttatctgattcttgggaaggtttttccagactgggatgaaagagagcttggc
attggtgaaaaacttctaataaaggccgtgtctatggccactggaataaacagtgaggag
attgaaaactcggtaagagacacgggagatttaggagagagcattgctcttgccttgaat
aagagaaaacaaaaaagtttcttctctcaaccacttacaatagaaagggtttacaatacc
cttgttaaaatagccgaagcttcgggagcaggaagtcaagacagaaagctcaagtatctt
gccaatcttttcatggatgcctcccctgatgagggtaaatatcttgcaagaacagttctt
gggataatgagaacaggagttgctgaaggtcttttgagggatgccttggcagatgcattt
aaagtaagagtagagcttgttgagagagcttacatgcttacaagtgattttggttttgta
gccaaggttgcaaagcttgagggtgatgaagggttggccaaagtgaagatacaggtgggg
aaaccaataaaacccatgctggctcaaatggctgcaaacgttagagaggccctggtggag
atgggcggagaggcagaatttgagattaaatacgatggtgccagagttcaggtgcacaaa
aatggaaataaagttctcatttattcaaggcgtcttgaaaacgttactaagtcaatcccg
gaagttgttgaaagagtgaaagaagctctaaaacctgaaaaagttatagtagaaggcgaa
ctggttgcggttgaagaaactggccgaccccgacccttccagtatgttcttagaaggttc
aggaggaaatacaatatagaggaaatgatagaaaaaatacctctcgagcttaatcttttt
gatattctttacgtggatggtcaaaatatgatagatactccatttatggagcggaggaag
gttcttgagagtgttgtaaattcaaacgaatggataaaatctgcagagaatctcataaca
aagagtccagaagaagcagaagctttttatcacaaggccttagatttgggccatgaaggt
cttatggccaaaagattggactcaacctatgaaccagggaacagaggaaagaaatggctt
aaaattaaacctacaatggagaacctggatctggtcgtacttggtgcagaatggggagag
ggcagaagaagcggcgttcttagttcgttccttcttggggcatatgatccggtgaaaggt
gattttgtcccagtaggtaaagtagggagtggatttactgatgaagatttggtagaattt
acgaaaatgcttaagccgctcataaagaaggagcatggcaaggaagtggaattagaaccc
aaagtagttatagaagtggcctatcaagaaatccagaagagtccaaagtatgagagtggc
tttgcccttagattcccgagatatatagcacttagagaggataaagggccagaagatgct
gatacagttcaaaggcttgctgaactctatcaattccaggagaggttaaaaggcggtagg
tga

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