Trichinella spiralis: Tsp_00587
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Entry
Tsp_00587 CDS
T01609
Name
(RefSeq) zinc finger protein
KO
K11997
tripartite motif-containing protein 2/3
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsp04121
]
Tsp_00587
Ubiquitin system [BR:
tsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
Tsp_00587
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
zf-RING_2
DUF5128
Plasmid_RAQPRD
Motif
Other DBs
NCBI-GeneID:
10901862
NCBI-ProteinID:
XP_003376379
LinkDB
All DBs
Position
Unknown
AA seq
763 aa
AA seq
DB search
MSSCCTTAVNTISSGCGVAGGGSSSLRYCSVGVTAAGSGCLEMSLGGSVSCNGTVGAMTL
KTTANAAVLSSHLTRCPLCSELYDQPKVLACFHTFCRACLEKLVDTPGKVLCPQCNLETQ
FSADQGVDSLFSDYALINLLEQLQVRAGSCTEASSSTVVSVDAASPSSSASPSTSSTSVL
QTNCTGCKSKDMSALAHCYDCTNYLCANCVMAHKYMHCFEGHRVVDLCDVIPSEVERVVR
CMQHRSEPLKYFCVSCSVPICSECLNSDHPRGMHHFELMSEVSGQQIKVMQQLLDEARNK
QMKLMESLKATEDATQRLLLSYQKAQQDIIETANLLQQVVEEQRQQAMRDLEQAYNCKQL
GVNVVDKKLQHTMEKLSHTIEFTSRLLQYTNSTETLVFKKLLENRIGVVLNYSPDMNALS
QSDLEFVPNVQGSRLAIMNTFGYVRQGQDLSYMGKSGLAPISRPTLSVTAAQYCQPNGSA
PGGPGLGLSIAAAHYLPVVNGSGGAVAGSAGSGAQVTGVSSHLGGGSLLNGSTGPSTAGG
HVSNSACVGVYLSLSCRRVAVNRATGDIIVTERSPTHQIQVYNQYGQFIRKFGANILQHP
RGVTVDYKGRIVVVECKVMRVIIFDMVGNVLVKFGCSKYLEFPNGVVTNDRQEIFVSDNR
AHSVKVFNYEGAYLRQIGGEGLTNYPIGVGINQLGEVVVADNHNNFNLTVFQQDGMLINA
LESKVKHAQCFDVALLDDGSVVLASKDYRLYIYRYLQVSSLIM
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttgttgcacaacggctgtcaatacgatcagcagtggttgtggtgttgctggt
ggtgggagttcgtcattgcggtactgcagcgtcggtgtgacggcagccggtagcggttgt
ctggagatgagcctcggtggcagcgtttcttgcaacggcactgtcggtgcgatgacgttg
aaaacgacggccaatgcggcagttctgtcgtcccatttgacccgttgcccgttgtgttcg
gaactgtacgaccagccgaaagttttggcctgctttcacacgttttgtcgagcttgtctg
gagaagctggtcgacacgcccggcaaggtgctctgtcctcagtgcaacttggaaacccag
ttcagcgctgatcagggtgtggattcgttgttcagcgattacgcgttgatcaaccttttg
gaacagttgcaagtgcgagccggctcttgcactgaggcgtcctcatcaacggttgtatct
gttgatgcagcatctccgtcgtcatcagcatccccgtcaacgtcgtcgacgtcggtattg
caaacaaattgtaccggatgcaagagtaaagacatgtccgctttggcgcactgttacgac
tgtacgaattatttgtgcgcaaattgtgttatggctcacaaatacatgcactgtttcgaa
ggacaccgtgttgtcgatttgtgcgacgtaatcccatcggaagtggaacgtgtggttcgc
tgtatgcagcatcgcagtgaaccgttgaaatatttctgcgtatcctgcagcgtgccgatt
tgttctgaatgtctgaacagcgatcacccacgtggcatgcatcactttgaactgatgagt
gaagttagcgggcaacagataaaggtgatgcagcagttgttggatgaggcgagaaataag
cagatgaaattgatggaaagtttgaaagcgaccgaagatgccacccaacggttgcttctg
tcctatcagaaagcccaacaggatattattgaaacggccaatttgcttcagcaagtggtc
gaagaacaacgccagcaagcgatgcgagatttagaacaagcgtacaattgcaagcaattg
ggtgtgaatgtagtggataagaaattgcagcatacgatggaaaagttgtcacacacgatt
gagttcacctcccgtcttctgcagtacacgaattcgacggaaacgttggttttcaaaaaa
ctgctcgagaaccgtattggcgttgtgttgaactattcgccggatatgaacgcgctttcg
cagtcggatttggaatttgtacccaacgtgcaaggctcacggttggcaattatgaacacg
ttcggctatgtacgtcagggtcaggatctttcgtacatgggcaaaagtgggttggcgccg
atatccaggccgacgttgtcggttaccgccgctcagtattgccagccgaatggatcggca
ccgggcggcccaggtttgggattgtccatcgctgctgcgcattacttgccggtggtgaac
ggcagcggcggcgccgtggccgggtccgcaggatccggcgcccaagtcactggagtctcc
tcccacctgggcggcggctcgttgttgaacggatcgacaggaccgtcgaccgccgggggg
catgttagcaatagcgcatgtgtgggtgtatatttatcattgtcttgccgcagggttgcc
gtcaatcgagccactggggatataattgtcaccgagcgcagtccgacgcatcagatccaa
gtctacaatcagtatggacagtttattcgaaaatttggcgccaacatcttgcaacaccct
cgcggtgtgacggtcgactacaagggtcgtattgtcgtggtcgagtgcaaagtgatgcgc
gtgatcatattcgacatggtcggcaacgtgttggtcaaattcggctgttcgaaatatttg
gaatttcccaacggtgtggtcaccaacgaccggcaggagattttcgtctcggacaaccgg
gcccacagtgtcaaagtgttcaactacgaaggcgcctatttgcgccaaattggcggtgaa
ggcttgaccaattatccgattggtgtgggcatcaaccagctgggggaagtggtcgtcgcc
gacaaccacaacaacttcaatctgaccgtattccaacaggacggcatgttgatcaatgcg
ctggaatccaaggtgaagcacgcccagtgtttcgacgttgcgctgctcgacgacggctcg
gtcgtgctggccagcaaagactaccgtctctacatctaccgctatttgcaagtgtcttcg
ttgattatgtag
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