Trichinella spiralis: Tsp_03531
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Entry
Tsp_03531 CDS
T01609
Name
(RefSeq) putative bromodomain protein
KO
K11655
bromodomain adjacent to zinc finger domain protein 1A
Organism
tsp
Trichinella spiralis
Pathway
tsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Tsp_03531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_03531
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
Tsp_03531
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromodomain
WAC_Acf1_DNA_bd
WSD
PHD_2
DDT
PHD
C1_1
WHIM1
Motif
Other DBs
NCBI-GeneID:
10909763
NCBI-ProteinID:
XP_003379882
LinkDB
All DBs
Position
Unknown
AA seq
1375 aa
AA seq
DB search
MPLLQGEPLRFFPHPDDLRPDEKVFYCPCTKEVFRDFEQYFKRTMILNSLVWTCAATGDE
GLTYEAALKSELAVCAPPDNIAEELIKAILFLVKLTAKVKLCDVVGMIHSFISSHVFVGE
TAHFVDNAGNRRTGVVRSITVPETVNKSDDNLEAASSPSEDANKMNVSKNSIGAKGTGAV
YVVEFSIDNIDDAANESLTGNTLLCCVDESKVFRKKPLSKEECYALLRAYCCTSQENIWV
VKDDIAERHEVAKLEWDKIYGGPLPDLSVYKSCNERQAPSESDESEDDAEDLGEDNSAKQ
HRALSLMWIEVDRYQVDIGAELKERLSKGLAVTEMDVRNIRALIKKAKEQCRLQKKENKK
RQRKNNPKCRKVRDDLLLLNDDDQVEFPTLTAVNLPKHVSPARFGDYLSLLDFLHQHGNR
IQLRDYFPEGVSLSMLYKATLDSDPEGIFAELLCYLLTVVFERQCEEDGDDVKLLKSEET
ATLDSAEIEYKFYLPKMEKATETFKEMRNTHGVSVYRLPIDGYTLSEVVRIYFESSGHFT
GSRNGRFRAMHRGSFKSYDDQAFNFAIQRPELISSLRQISIYDLKPDDRLDLLLVLRDQL
LTFQLFRQLLDNSNERVRSIRFDLLRQKMPNGGVEREMICFLKSTLRCGERSRAAAANSK
HQQQVEVVEEEQHQLSSLLKRFQSFVDRPLSDDVDLSDFVETLTSARLDELQTADQVELV
RKLRRHLFNQLYRSALFDLFELQSTVGMCLLGQDRNCRRYYFVRSVGAVLVETTVDVGAG
GAAPNVDQPTPEPCWHLFHDLDTLNALLRSLNRRGEREAELAANLLLFKGQLVQMFASFD
DTLSNGQSEPPTALTVEPPVDSELVVERAFRLSLLDFENRLFYSRMQVAPLADRQRWREQ
LEDKDDDNTDGGGGGGGGRRLSANCLARLLVELVDTVDCKFMENFSTRPVKKLTAPNHHN
CVPTTTTSADDSAVQCSSSSVDGQSTIDSAESNFFLIDLPEFVETVVGQLRLVFVVAFAL
ADFGQTVDLAQVDFEHALPQVPSQGRHEQFGRLQRLRPRGSLGLFEAQDWNGKKTTTAGG
VEAQTEAELDETEMEMEVEVEVEEGRRNHQEQEKEVQKSDTFSICSNCTTVIRHIKQRIH
CSNCALSFHTRCVGVKKSEIAVASWLCKNCKPQIPNGVNGKNSQLKLSRSGRPLRGYISP
PFASSSFIAKSPNGITVQSAGNCDSNGLTQKRKPKNNGRLKKRTTIDKKQRVEQQSDVES
RCNTCISRLVEHPDAWPFLKPVSRREAPDYYDVIEQPMDLHTIQMRLLRHEYSSVSDMVR
DAQLMFSNCRQYNEAETEVYACGERLSKFCQQQLEHLKLRDHEKLNGRKRRRAAF
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgccgttgctgcaaggtgaacctttacgtttttttccacaccctgacgatttgcgtccg
gatgaaaaggtgttttattgtccatgtacaaaggaagtgttcagggattttgagcagtat
tttaaacgtactatgatacttaattccttggtttggacatgtgcagctacaggtgatgaa
ggtttgacatatgaggctgcattgaaatcagagcttgcagtttgcgctccacctgataat
atcgctgaagaattgattaaggcaattctttttcttgttaaattaactgcaaaagtgaaa
ctgtgcgatgttgtgggtatgatacacagcttcatctcctctcatgtttttgttggcgag
acggcgcattttgttgataatgcaggaaacaggagaactggtgtggtaagatccattaca
gttcctgagactgtgaacaagtcagatgacaatttggaagctgcatcgtcacctagtgaa
gatgcgaataaaatgaatgtttcaaaaaattcaattggtgctaaagggactggagcggtt
tatgttgtcgaatttagcattgacaatatcgacgatgcggctaatgaaagtttaactgga
aatactttgttgtgttgtgtcgatgaatcgaaagtttttcggaaaaaacctctttccaaa
gaagaatgttatgcacttttgcgtgcttattgttgcacttctcaggagaatatttgggtt
gtgaaggatgatatcgcagagcgacatgaggttgcaaaattggagtgggataaaatatac
ggcggtccgttgccagatttgtcagtttacaagagttgcaacgaacggcaggcgccaagt
gagagtgacgaatcggaggacgatgccgaagatttgggtgaagacaatagtgcaaagcag
cacagagcattgtctctcatgtggatcgaggtggacagatatcaagttgacattggagcc
gaactcaaagagcgtttgtcgaaaggtttggcagtgaccgaaatggacgttcgtaatatt
cgagctttgataaagaaagcaaaagagcaatgtcgtctgcagaagaaggagaataaaaag
cgtcagcggaaaaataatcccaaatgccgcaaagtgcgggacgatttgttgctgttgaac
gacgacgatcaggtcgaatttcccactttgactgcggtgaatttgcccaagcacgtctcg
ccggctcgttttggcgactatttgtcgttgttggattttttgcaccagcacggcaatcga
atccaactgagggactattttcccgaaggggtttcgttgtcgatgttgtacaaggcgacg
ttggactcggatccggaggggatttttgccgaactgttgtgctacttgttgactgttgtt
ttcgaacgtcagtgcgaagaggatggtgatgatgtgaaacttttgaaaagtgaagaaacc
gcaacgctggacagtgctgaaattgaatacaaattttatttgcccaaaatggaaaaagcg
acagagacgttcaaagagatgcgcaatacccacggcgtcagtgtttatcgcttgcccatc
gacggttacacgttgtccgaagtggtgcgtatttatttcgaatcgagcggtcatttcacg
ggtagtcgcaatggtcgttttcgggcaatgcaccgcggcagtttcaaaagttacgacgac
caggctttcaattttgccatccaacgacccgaactgatctccagtttgaggcaaatttca
atttacgacttgaagccggatgaccgtctggatttgttgttggtattgcgcgaccagttg
ctgacttttcaactgttccgccagttgttggacaacagcaacgaacgggtgcggtcgatt
cgattcgacttgctacgtcagaagatgcctaacggtggcgtcgaacgtgaaatgatttgc
tttttgaaatcgaccctgcgctgcggtgaacgatcacgagcggcggcggcaaattccaag
caccagcagcaggtcgaagtggtcgaagaggaacagcatcagttgagcagcttgttgaag
agattccagtcgtttgtcgaccgtccgctgagcgacgatgtggatttgagcgatttcgtc
gaaacgttgacgtcggctcgactcgacgaactgcaaaccgccgaccaggtggagctggtg
cgcaagctgcggcgccacctgttcaaccagctctaccgcagcgcgttgttcgacctgttc
gaactccagtccaccgtcggcatgtgtctgctcggccaggaccgtaactgccgtcgctac
tactttgttcgttcggtcggcgctgtgctcgtcgagaccaccgtcgacgttggcgccggt
ggcgccgcccccaacgtcgaccagccgactcccgaaccctgctggcacctgtttcacgat
ttggacactctgaacgctttgttgcgcagtttgaatcggcgcggcgagcgcgaagccgag
ctggcggccaatttgttgctgttcaaaggtcaactggtgcaaatgttcgcctcgttcgac
gacacgctcagcaacggccagtccgaaccgccgaccgctttgacggtcgagccgccagtc
gactcggaactggtcgtcgagcgggcgtttcgtctgtcgttgctcgactttgaaaatcgt
cttttctacagtcgcatgcaggtggcgccgttggccgatcggcaacgttggcgcgaacaa
ttggaagacaaagacgacgacaacaccgacggcggcggcggcggtggcggtggacggcga
ctgtcggcgaattgtctggcgcgactgttggtcgaactggtcgacacggtcgattgtaaa
tttatggaaaatttctcaactcgtccggtgaagaagttgaccgcgcctaatcatcataac
tgcgtcccgacaactacgacctctgcagacgattcggctgtccaatgcagcagcagttct
gtcgacggccagtcgacgatcgattcggcggaaagtaatttttttttaattgacttgcct
gaatttgtggaaacagtcgttggacaattgcgcctcgtattcgtcgttgcatttgcactt
gctgactttggacaaacagttgacttggcgcaagtcgattttgaacatgcgttgccgcaa
gtgccgtcgcaagggcgacatgaacaatttggccgtctgcaacgactgcggccgcgcggt
tcacttgggctgttcgaagcccaagattggaatggaaagaaaacgacgacggctggcggc
gttgaagctcaaactgaagctgaacttgacgaaacggaaatggaaatggaagtcgaagtc
gaagtggaagaaggaagacgaaatcaccaagagcaggagaaagaagttcaaaaaagcgat
actttttcaatatgttccaattgtactaccgtcattcgacacatcaaacaacggattcat
tgctccaattgcgctttgtcgtttcacactcggtgcgtgggagtgaaaaagtcggaaatt
gcagtcgccagttggctttgtaaaaattgcaaaccgcaaattccgaacggcgtcaatggt
aaaaattcccaactgaaattgtccagatctggacgtccattgcgcggctacatatctcca
ccatttgcttcttcatctttcatcgctaaaagtcccaatggaattacagtacaatcggct
ggaaattgcgattcgaatggtttgactcaaaaaagaaaaccgaaaaacaatggccgtttg
aaaaagcgcaccacaattgataaaaaacaaagggtcgaacagcagtcggacgtcgaatcc
cgttgcaacacttgcatcagtcgactggttgaacatcccgacgcttggccatttttgaaa
cccgtatccagacgagaagcacctgattattatgatgttattgaacagccgatggatttg
cacactatacagatgagacttttgagacacgaatattccagtgtcagcgatatggttcga
gatgctcagttgatgttttccaactgccggcagtacaacgaagctgagacggaagtttac
gcttgcggtgaacgattgtcgaaattttgccaacagcaattggaacacctcaaactgcgt
gatcatgaaaaattgaacgggcgcaaacgtcgaagagcggctttttaa
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integrated database retrieval system
