KEGG   Trichinella spiralis: Tsp_04168
Entry
Tsp_04168         CDS       T01609                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tsp  Trichinella spiralis
Pathway
tsp03030  DNA replication
tsp03410  Base excision repair
tsp03420  Nucleotide excision repair
tsp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Tsp_04168
   03410 Base excision repair
    Tsp_04168
   03420 Nucleotide excision repair
    Tsp_04168
   03430 Mismatch repair
    Tsp_04168
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tsp03032]
    Tsp_04168
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_04168
Enzymes [BR:tsp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Tsp_04168
    6.5.1.6  DNA ligase (ATP or NAD+)
     Tsp_04168
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Tsp_04168
DNA replication proteins [BR:tsp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Tsp_04168
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Tsp_04168
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Tsp_04168
   NER (nucleotide excision repair)
    Other NER factors
     Tsp_04168
   MMR (mismatch excision repair)
    Other MMR factors
     Tsp_04168
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 10904754
NCBI-ProteinID: XP_003374984
LinkDB
Position
Unknown
AA seq 825 aa
MNFGITVLRLFSRKLLFSTACCKFPNKYSSIMSQASLTSFFAPKGSADSEKRTLSKRKSD
LSAVEASNSNPASSVITKDLSKFTEIDEKKRKVQKVDSNDDRLENDSVKNASENAACTSK
KGYTILAKENSYIDPKPNILFISKSTQLVKLVKNCFSEQEDVVEPQNYKPDATTYDPECN
ACWRAGEQVPYLAFAYTMKAIENTSSRLEIIRILSNFFQSVIWLNPDDLLPCIYLCLNRL
GPSYEAVELGIAEGTLQKAVAQSTGRSMEKIKADIADKGDLGIVAEMSRNMQRTIFATRP
LTVAGIFAKLNQIAHLSGSSSMNKKLEMVKGLLVSCRDCEARYLIRCLSGKMRIGLAEQS
LLVALAHAFAFIERKKENKKKLRDDALKEYLDECALIMKTAECPDYGKIVDIALRHGLHA
LPEHCHITPGIPLKPMLAFPSKGIEEVLKRFGSAEFACEWKYDGERAQIHFYDGTVKVFS
RNQENHTGKYPDIVELIPKVLSATNNKNNQTDPISSCIIDSEIVAWDTENQSILPFQVLS
TRKRKDAESGDVKVNVSVFAFDLLYLNGQSLTTQPFRERRSMLRSLIEEMDGHFFFTKSL
VTNDSDEIGQFLEEAVKGNCEGLMLKTLDKDATYEIAKRSHKWLKLKKDYLDNTGDTVDL
VVIGGYLGVGRRVGVYGGYLLACYNPTTEEYQSICKIGTGFKDEDLQKQAEFFKQHIISA
PKSYYRYSSSIAPDHWFDPVQVWEVKAADLSISPKHFAAIGIVDDEKGISLRFPRFIRVR
DDKNPEDATTAEEVAEIYYNQESVKNAKAAATKDVLSDNDVDDDF
NT seq 2478 nt   +upstreamnt  +downstreamnt
atgaattttggtatcacagttttacgcttatttagccgtaaattgttgttcagtacagct
tgttgcaaatttccaaacaaatacagctctatcatgtcccaagctagtttgacgtcattt
tttgctccaaaaggaagtgctgattctgagaagagaacgttatcgaaaagaaaatcagac
ttgtctgcagttgaagcttcgaattcaaaccccgcctccagtgttataaccaaagactta
tccaaatttactgaaattgatgaaaagaagaggaaagtgcagaaagttgattctaacgat
gacagattagaaaatgatagcgttaaaaatgcatccgaaaatgctgcgtgtaccagtaaa
aaaggctatactattttggcaaaggaaaattcttatattgaccctaaaccaaatattttg
tttattagcaaatctacccaactagtaaaactcgtcaaaaattgtttcagtgaacaagaa
gatgttgttgaaccccaaaactacaagccagatgcaacaacgtacgatccagaatgtaat
gcttgttggagagcaggtgaacaagtaccttatcttgctttcgcatatacgatgaaggca
attgaaaatacatcgtctagattggagattattagaatattgtctaatttttttcaatct
gtcatttggcttaatcctgatgatttattgccttgtatatatctttgtctgaatcgtctt
ggaccatcttacgaagcagtagaattaggtattgccgaaggtacactgcagaaagctgtg
gcgcaatcgactggtcgcagcatggagaaaatcaaagcagatattgccgataaaggcgat
ttgggaattgtggccgaaatgagtaggaatatgcagagaacaatattcgctacgcgtcct
ttgacagttgctggtatttttgcaaagttgaatcaaattgctcacttgtcgggcagcagt
tcaatgaacaaaaaattggaaatggtcaaaggtttgttggtaagctgtcgagattgtgaa
gcgcgttatttgatacgttgtttgagtgggaaaatgcgtatcggtcttgcagaacaaagt
ttgttagtagcgcttgcgcatgcttttgcatttattgaaaggaaaaaagaaaacaagaaa
aaacttcgagatgatgctttgaaagaatatcttgatgaatgtgctttaattatgaaaaca
gctgaatgtcctgattatggcaaaattgtcgacattgctttgaggcatggtctgcatgct
ttgccggagcattgtcatatcacgcctggcattccgttgaaaccgatgcttgcgtttcca
agtaaaggtatcgaagaagttttgaaaagatttggcagtgctgaatttgcatgtgaatgg
aaatacgacggcgagagagcacagattcatttttacgatggtactgtaaaagtgtttagc
cgtaatcaagaaaatcatacaggaaagtatccagatattgttgaattgattccgaaagtg
ctgtcggctacgaataataaaaataatcaaactgatcccatctcgtcttgcattattgac
tctgaaattgtagcatgggatacggaaaatcagtcgattttaccttttcaagttttatcg
actcgcaagagaaaggatgcggaaagtggtgatgttaaagttaacgtttctgtttttgct
ttcgatttgctttatttgaatggtcagtcgttgaccacgcaaccgtttcgtgaaaggcgt
agcatgttgcgttcactgattgaagaaatggatggacattttttcttcactaaaagtttg
gttactaatgattcagatgaaattggacaatttttagaagaagcagttaaaggcaattgc
gaaggtttaatgttgaaaacattggataaagatgcaacttatgaaattgcaaagcgatcg
cataaatggttaaagttgaaaaaagattatttggataatacaggcgatacagtagattta
gtagtcattggaggttatttgggtgtaggtcgtcgcgtgggcgtttacggcggttacctt
ctagcttgttataatccaactactgaagaatatcaaagtatatgtaaaattggtactggt
ttcaaagatgaagacttacagaaacaggcagaatttttcaaacagcacataatttctgct
ccaaaatcgtactacagatattccagctcaatagcaccggatcactggttcgatccagtt
caagtatgggaagtgaaagcggctgatctttctatatcaccaaaacatttcgcagcgatc
ggtattgtggatgatgagaaaggtatttcgttgcgttttccgcgtttcatccgcgtgcgt
gatgacaaaaatcccgaagatgcaacaacggcagaagaagtagctgaaatttactacaat
caggaaagtgtgaagaatgcaaaagctgctgccacaaaagatgtgctaagcgataatgat
gttgatgatgatttttaa

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