Trichinella spiralis: Tsp_08028
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Entry
Tsp_08028 CDS
T01609
Name
(RefSeq) WD repeat-containing protein 82
KO
K14962
COMPASS component SWD2
Organism
tsp
Trichinella spiralis
Pathway
tsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Tsp_08028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_08028
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_08028
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Tsp_08028
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
Tsp_08028
COMPASS/SET1 complex (yeast)
Tsp_08028
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
10906585
NCBI-ProteinID:
XP_003373430
UniProt:
E5SLE6
LinkDB
All DBs
Position
Unknown
AA seq
353 aa
AA seq
DB search
MDYYNILSFDNDAVCTTELGMMHYEQCSPYIMLNVDENMFRQFSPRKIFPFNQLPVNSLD
FSQDGSVLATGSDDDSIYLYDCCLGIKKGLVSCKKYGVDHVRYFPLSTAVVHASTKVDDS
VRYLSLEENNYIRYFTGHTKKVTALCMNGHDNTFLSCSEDKSIRLWDIRSSNCHGYIETC
GIPVSSYDPGGEHFAIACSPGDIALYDRREFDKGAFAEFSLYNSDRSTVFYDLKFSPDGS
TILISAYGGMFYLIDAYTYRLMFTFTLQPFMQGFNPVRVEATYTPDSAFVICGSLHGWLY
CWNCNTGQLSFSLPVGTKNAHEEAIRCVRFNHAYAVIATAGVKTVLWSPLNFG
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggactactacaacatattatctttcgacaacgatgctgtatgtaccaccgaattaggt
atgatgcactacgaacaatgttcgccatatataatgcttaacgttgacgaaaacatgttt
cgtcagtttagtccaagaaagatatttccatttaatcaactgcctgtgaacagtttagat
tttagtcaagatggatccgtgctggcgacgggttcggacgacgattccatctacttatat
gactgttgcttaggaatcaaaaagggattagtgagttgtaaaaaatatggcgttgatcac
gttcgttattttcctctcagtacagctgtagttcatgcttcgacgaaagtagatgatagt
gtacgttatttgtcgcttgaagaaaacaactatattcgttattttacgggtcatacaaaa
aaagtgaccgctttatgtatgaatggacacgataatacttttctttcttgttctgaagac
aaaagtattcgtttatgggatatcaggtcatcaaactgccatggttacatagaaacatgc
ggaatacctgtatcaagttatgatcctggtggtgagcacttcgccattgcttgtagtcca
ggtgatatagctttgtatgatagacgagaatttgataaaggagcttttgctgaattttca
ttgtacaactcagatcggtcgacggtattttatgacctgaaattttctccagatggatca
acgattctcatttctgcttatggtggaatgttttatctgattgatgcttatacgtacaga
ttgatgttcacgttcacacttcagccatttatgcaaggcttcaatccagtacgtgttgaa
gcgacctatactccagattcagcttttgttatctgcggatcactgcatggatggctgtat
tgttggaactgtaatactggtcagttaagctttagcttaccagtcggaaccaaaaacgct
cacgaagaagctattcgatgtgttcgttttaatcacgcatatgcagttattgctactgct
ggagtaaaaactgttctgtggagtccgttgaattttggctag
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