Trichinella spiralis: Tsp_08511
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Entry
Tsp_08511 CDS
T01609
Name
(RefSeq) putative RecF/RecN/SMC N domain protein
KO
K22803
structural maintenance of chromosomes protein 5
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_08511
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
Tsp_08511
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
Motif
Other DBs
NCBI-GeneID:
10904573
NCBI-ProteinID:
XP_003375525
LinkDB
All DBs
Position
Unknown
AA seq
960 aa
AA seq
DB search
MHPGPDLNMVFAPNGTGKSAILCAVCLVFGGTPKIIGRSAKVEDYIKWNRNEARIHVEIA
SELKKREKFSLIIKKQGRAQYYVDGVASTRKSVRCIAQKYQIQVNNICQFLAQDRVVEFS
KQSPLDLLKNTVFTVGQCDLKEKYDTMHMFKQNVVEAEYAKQCHSEKQKELRARIRSLEP
AMQAYRYQQRKKEELRRLRTKLSYLHYEQARIQYCDVDKEYMDLKQSLKQLSEQYSSVFM
KLNTLENNIHRLQNLFQKNKGVLRSKIRRIRNSQLSGSDVKHKLRKAVHEWKTTTEHINN
FDKIKQSLCDSIKEHKEMVETKEKRMPKLMDDRKEIQVNIDNLKPILQNVEAVVRARFSE
FTTVKRQAEVAKDQLLLVKHIATERLNLLGKVRPRYREAYLWLCRNRSSLKGNFYLPFLT
VNVASIDHGLFIENTMSFRDLTTFLFDLPSDLRIFIAYTIRADIKVSTGIAPAKYAGRIV
QMDDSLRQSGFGGVVSDCIIAPQCVKNYMRILGNLDRILFGSATVDNNLDRATMCVANHR
LSRFITTRHNGFVFRSPYTGNVSTSSRTVRPCRIFALSVKTKNKLFQEKQIAFSKAKAAA
QIERDKMAKFVRARNEIQSSLNEIENLRKRLQRLETKYSTRHTQITLVTIWEETNECHHE
TVLAYEVYDKELKLTVKERELRRILQEQVNTKEKEWKLKKVKALKTLTDLTKALGKPLQT
AIEVIELPREYSGLSDSVDELNENIKIIEDILRNADPSIEKDAAEYMRLCAENEKMTTEF
TSLENKVKELNFAYQNSKLEFVNAMGNAIGEISKQFCRFMFKLDATGEICLENCPTERSC
DYGLIIKVKFSGNRSLRKLDHMRQSGGERCISTMLYMLALQKSCKVPFRFLDEINQGVDE
QNERLLMQLINSLVQELKSDTAGGHSTCTSQYFLLSPKVLRDDSYGDYCKVGFVCKTQHI
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgcatccaggtccagatttgaatatggtttttgctcccaatggaacaggcaaaagtgca
attctttgcgctgtatgtttggtcttcggcggtactccaaaaattattggtcgttcggca
aaggttgaagattacattaaatggaatagaaatgaagctcgtatacatgttgaaatagca
tccgaattgaaaaagagagaaaaattctcactgattattaaaaagcagggcagagctcaa
tattatgtggatggtgtcgcttcaacgagaaaatctgttcgttgtattgcccaaaaatat
cagattcaagtaaataacatttgtcagtttcttgctcaagatcgggttgttgaattttcc
aaacagtcgcctcttgatttgctcaaaaatacagtttttacggttgggcaatgtgacttg
aaagaaaaatacgacaccatgcatatgtttaagcaaaatgttgtagaagctgaatatgca
aagcagtgtcattcagagaaacaaaaagaactacgagctcgtatacgtagtttagaacca
gcgatgcaagcttacaggtatcagcagaggaagaaagaagagctacgcaggcttagaacg
aaattatcatatctacattatgaacaagcaagaattcaatattgcgacgttgataaagag
tacatggatctgaaacagtcgttgaagcaactgagcgagcagtattcatcagttttcatg
aaattgaatacactggaaaataatattcaccgtttgcaaaatttatttcagaaaaataag
ggagttttacgttctaaaattagacgaataaggaacagtcaactatccggctcggatgtt
aagcataagcttcggaaagctgttcacgagtggaaaaccaccacagagcatataaataat
tttgacaagattaaacagtcactttgtgattccatcaaagagcataaggagatggtggag
accaaagaaaagcgaatgcccaagctgatggacgacaggaaagaaatccaagtgaatatt
gacaatttgaagccaattttgcagaacgttgaagcagtcgtacgggcgcgtttttcggaa
tttacaacagtgaaacggcaagctgaggttgccaaagatcagttgctgctagtgaagcat
atagctactgaaagattaaatttactgggaaaagtgaggccaagatatcgtgaagcttat
ttgtggttgtgtcgaaacagatcatcattgaaaggcaacttttacttgccatttttaact
gttaatgttgccagtattgaccatggattgtttattgaaaatacaatgtcatttcgggat
ttgacgacctttttattcgacctaccatcagatttaagaatttttatagcatacactata
agagcagatattaaagtcagtactggcattgcaccggcaaagtatgctggaagaattgtg
caaatggacgacagtttaaggcagtctggttttggtggtgtggtctcagattgcatcata
gcaccacaatgtgttaaaaactacatgcgcattttgggaaatttggatagaattctcttt
ggttccgcaaccgtcgataataacttggatcgagcaaccatgtgtgtagcaaatcataga
ctttctcgtttcattactacccgccataacggatttgtttttcgttcaccatacactggg
aatgtgtctacatcatctcgtacagttcggccatgtagaatatttgcattgtcagtgaaa
acaaagaacaaattatttcaagagaagcagatagctttttccaaagcaaaagcagctgct
cagatagagagggacaagatggcgaaatttgtgcgagccaggaatgaaattcaatcatcg
ctgaatgaaattgaaaatttgcgcaaaaggttgcaacgcttggaaaccaagtacagtact
agacacacgcaaattacattggttaccatttgggaagaaactaatgaatgtcatcatgag
accgttttagcttatgaagtttatgataaagagctgaagctgacagttaaagaaagggaa
ttgagacggatattgcaagagcaagtgaacacgaaagaaaaggagtggaaattaaaaaaa
gtgaaagcattgaaaactctgaccgatctgacgaaagcattgggcaaacctctacaaact
gcaatcgaagtcattgaacttcctcgggaatattccggcttatcagattcagtggatgag
ttgaatgaaaatattaaaataattgaagacattttaagaaatgcagatccttcaattgaa
aaagatgcggccgaatacatgcggctgtgcgcagagaacgaaaagatgactactgaattt
acatcactggaaaacaaagtaaaagaattgaattttgcatatcaaaattccaaactcgag
tttgtcaatgcaatgggcaatgcaattggcgaaattagcaaacaattttgccgtttcatg
ttcaagttggatgccactggagaaatttgcttggaaaattgccccactgagagatcttgt
gattatggattgattattaaagtcaaattcagcggcaatcgatcattacgaaaattagat
cacatgaggcagtcgggcggcgaacggtgcatatctacaatgttgtacatgttagcgttg
caaaagtcgtgcaaagtgccttttcgatttctggatgaaattaatcaaggagtagatgag
cagaatgagcgacttcttatgcagcttattaatagccttgttcaagaattgaaatcggac
accgccggcggtcattctacttgtacatctcagtatttcttgctttcaccaaaagtactg
cgagacgacagttatggtgactattgtaaagttggattcgtctgtaaaacgcagcatatt
tga
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