Thamnophis sirtalis (common garter snake): 106538454
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Entry
106538454 CDS
T06107
Symbol
SOX17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
106538454 (SOX17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsr03000
]
106538454 (SOX17)
Transcription factors [BR:
tsr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
106538454 (SOX17)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Sox17_18_mid
HTH_24
Adeno_E1A
Motif
Other DBs
NCBI-GeneID:
106538454
NCBI-ProteinID:
XP_013908416
UniProt:
A0A6I9X260
LinkDB
All DBs
Position
Unknown
AA seq
385 aa
AA seq
DB search
MSSPDAGYASSDDQAQGRSSLPPLMMQCQWAESLSPLTVGKGKGEAAADQVQQGASGRAK
GETRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGQSWRALTQEEKRPFVEEAER
LRLQHMRDHPHYKYRPRRRKQVKRLKRNDGAVDGGSGFLPVQHHQLGLPGEAGNGGSCEG
LGLSYAEQPNYAGGSFHYRDCAPLPLSALGTHFGNYSLPTPEPESQGGNCAEPVFFPPPH
PEEGGCLLGPYGYPTPPGSEYPGNGVPAGGHNNNAGSPSVGVSFFRSRFPVSLASYPSSP
APDHAQQQQQQPRRRAEAPAGLEQLPPHDVDLLADVDRAEFEQYLPFACRPGDLGLPYAS
HEGPEANAAAYYCAAAGGAGTYPEL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccccgatgctggatacgccagtagcgacgatcaggcgcaaggacggtcctct
ctccctcccctcatgatgcagtgtcagtgggcagaatcgctcagccccttaaccgttggc
aaaggcaaaggcgaagccgcggccgatcaagtacagcagggagcctcgggccgggccaaa
ggagagacccgcattcgccgccccatgaacgctttcatggtgtgggccaaggacgaacgc
aagcggctagcgcagcagaacccggatctgcacaacgcggaacttagcaagatgctggga
cagtcgtggcgggcgctgacccaggaggagaagcgccccttcgtagaggaagcggagcgg
ctgcggctgcagcatatgcgggaccacccccattacaagtatcggccgcggcggaggaag
caagtcaagcgcctcaaacgcaacgacggcgcagtggacggcgggagcggcttcctccca
gttcagcatcaccagttgggtctgcccggggaggcgggaaatggaggcagctgcgagggg
ctcggcctttcttacgcagagcagccgaattacgccggtgggagctttcattaccgggac
tgcgcgccgcttccgctgtcggctttgggcacccatttcggaaactacagcttgcctacg
ccggagcccgaatcccaggggggcaactgcgcagaacctgtcttcttcccgccaccccac
ccggaggaaggcggctgtctgctgggcccctacggctacccgacgccgcctggctccgag
tatccgggcaacggcgtgcctgccggcggccacaacaacaatgccggtagtcccagtgtc
ggcgtcagctttttccgtagtcgcttcccggtgtccttggcctcctacccttcctcgccc
gccccggaccacgcgcagcagcagcagcagcaaccccgtcgccgggcggaggcccccgcg
gggctcgagcagctgcccccgcacgacgtggacttgctggcagatgtggaccgcgccgag
tttgagcagtacctgcccttcgcctgccgtccgggcgacctggggctcccctacgcgagc
cacgaaggtccggaggctaacgccgctgcctattactgcgcggccgcgggtggggccgga
acgtatcccgagttgtga
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