KEGG   Thamnophis sirtalis (common garter snake): 106540550
Entry
106540550         CDS       T06107                                 
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5
  KO
K15172  transcription elongation factor SPT5
Organism
tsr  Thamnophis sirtalis (common garter snake)
Pathway
tsr03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    106540550 (SUPT5H)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsr03021]
    106540550 (SUPT5H)
   03019 Messenger RNA biogenesis [BR:tsr03019]
    106540550 (SUPT5H)
Transcription machinery [BR:tsr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     106540550 (SUPT5H)
  RNA polymerase I system
     106540550 (SUPT5H)
Messenger RNA biogenesis [BR:tsr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     106540550 (SUPT5H)
SSDB
Motif
Pfam: KOW Spt5-NGN Arabino_trans_N DUF150_C DUF3912
Other DBs
NCBI-GeneID: 106540550
NCBI-ProteinID: XP_013911186
UniProt: A0A6I9XA37
LinkDB
Position
Unknown
AA seq 935 aa
MKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERSTAIALMRKFI
AYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRMGYWNQQMVPIKEMT
DVLKVVKEMTNLKPKSWVRLKRGIYKSDIAQVDYVEPSQNQISLKMIPRIDFDRIKARMS
QKDWVAKCKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMLAV
ITDGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKIL
SVDGNKITIMPRHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI
LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHELGELVLLDPQTVGVIVRLERETFQVL
SMNNQLVTVRHQAVNRKKDNRFAVSLDSEQNNIHVKDIVKVIEGSHSGREGEIRHLFRGF
AFLHCKKLVENGGMFVCKTKHLILAGGSKPRDVTNVTAGGFVPMSPRMNSPMHPSSGGPR
GGFGGGGMNRGRGRRDNDLIGQTVRISRGSYKGYIGMVKDATESTARVELHSTCQTISVD
REHLTIVDSKKPSGMPSGYGRTPMYGSQTPMYGSGSRTPMYGTQHEGNRTPHYGSQTPLH
DGSRTPAQSGAWDPNTPSRPEEEFDYGFNDEPTPSPQGYGGTPNPQTPGYPDPSSPQVNP
PYNPQTPGTPAMYNTEQFSPYAVPSPQGSYQPSPSPQSFHQVAPSPVGYQNTHSPASYHP
TPSPMAYQASPSPSPVGFSPMTPGAPSPGGYNPHTPGSGIEQSSSDWVTTDIEVKVHDTY
MDSLVVGKTGVIRSMNGGMCSVYVKKCEKVVSISSEHLEPTTPTKNDKVKVLLGEDREAT
GMLLSIDGEDGIVRMNPEEQLRILNLRFLGKLVEA
NT seq 2808 nt   +upstreamnt  +downstreamnt
atgaagaaatacgccaagtcttccgtgggcgagactgtgtacggcggctccgatgagctt
tctgatgacatcacacaacagcagctacttccgggagtcaaggaccccaatctttggacg
gtgaaatgtaagattggagaagagcgttccaccgccatcgccctgatgaggaagttcatc
gcctaccagttcacggacacacccttgcagatcaagtcagtggtggctcccgaacacgtg
aagggctacatctacgtggaggcctacaagcagacccacgtgaagcaggccatcgagggg
gtgggcaacctccggatgggctactggaaccagcagatggtgcccatcaaggagatgacc
gacgtgctgaaggtggtgaaggagatgaccaacctcaagcccaagtcttgggtgcggctc
aagaggggcatctacaaaagtgacatcgctcaggtagattacgtggagcccagccagaat
cagatctcgctcaagatgattccgcgcatcgatttcgatcgcatcaaagctcgcatgagc
cagaaagattgggtggccaaatgtaagaaattcaagcgtcccccacagcgactctttgat
gcagaaaaaatccgatctctgggtggtgacgtggcctccgacggggatttcctcatcttc
gaagggaatcgctacagccggaaaggcttcctcttcaagagcttcgccatgctggctgtg
atcaccgatggagtgaagcccactttgtccgagctggagaaatttgaggaccagcccgaa
gggatcgacttggaagtggtgaccgagagcaccgggaaggaacgggaacacaactttcag
ccgggagacaacgtggaggtgtgcgaaggggagttgatcaacctgcaggggaagatcctg
agcgtggacgggaacaagatcaccatcatgcccaggcacgaagacctcaaggatatgctg
gagttcccagctcaggagctgcgcaaatacttcaaaatgggggaccacgtgaaggtcatc
gccgggcgcttcgagggcgacacggggctgattgtccgcgtggaggagaactttgtcatc
cttttttctgacctgacgatgcacgagctcaaagttcttccgcgagaccttcagctctgc
tccgagaccgcctctggtgtggacgtggggggccagcacgagctgggggaactagtgttg
ctggacccccagacggtcggggtcattgtgcgtctcgaacgcgagaccttccaggtcctg
agcatgaacaaccagctggtgacggtgcggcaccaggcggtgaatcggaagaaggacaat
cgcttcgcggtctccctggactcggagcagaacaatatccacgtgaaggacatcgtgaag
gtcatcgaagggtctcattcgggccgcgagggggagattcggcacctcttccgcggcttc
gccttcctgcactgtaagaagctggtggagaacggagggatgtttgtgtgcaaaacgaag
catctgattctggccgggggctccaagccccgggatgtcaccaacgtcacggcgggcggc
ttcgtgcccatgagcccacggatgaacagcccgatgcaccccagctctggagggccacgg
ggcggctttggcgggggcggaatgaaccgaggccgtgggcgcagggataatgacctgatt
ggacagacggtgcggatttcccgagggtcttacaaaggctacatcggcatggtcaaggat
gccacggaatccaccgccagggtggagctgcactccacctgccagaccatctcggtggat
cgggaacatctgacgatcgtggattccaaaaagccatccggcatgccctctggctacggg
cgcacccccatgtacggctcccagacgcctatgtacggctccggttcccgtacgcccatg
tacgggacccagcacgaaggaaaccgtacgccgcactatggttcccaaacacccttacat
gatggcagccggacacccgcccagagcggcgcctgggatcccaacaccccttcgaggcca
gaggaagagtttgactacggattcaacgatgagcccacgccttctccccaaggctacggg
ggaacccccaacccccagaccccaggctacccagacccttcctccccgcaggttaaccct
ccatacaaccctcagacgcccggaaccccagccatgtacaacacggagcagttctctccg
tacgccgtcccgtctcctcagggctcctaccagccgagtcccagccctcaaagtttccac
caagtggcgcctagccctgtgggctaccagaacacccactcccctgccagctaccacccg
actccttcacccatggcttaccaggctagccccagccccagcccggtgggctttagccct
atgaccccgggggctccttccccagggggctacaaccctcacaccccaggctctgggatt
gagcagagctccagcgattgggtcaccactgatatcgaggtcaaagtgcacgacacgtac
atggacagccttgtggtggggaagaccggagtcatccgtagcatgaatggtgggatgtgt
tcggtctacgtcaagaaatgtgaaaaggtggtcagcatttcaagcgaacacctggaacct
accacccctaccaagaatgataaggtcaaagtcctcttgggagaagaccgcgaagcaacg
gggatgttgctgagcattgatggggaagacggcatcgtccgcatgaacccagaagagcag
cttcgaattctcaacttgcgcttcctgggcaaactcgtagaagcttag

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