Thamnophis sirtalis (common garter snake): 106540788
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Entry
106540788 CDS
T06107
Symbol
KDM1A
Name
(RefSeq) lysine-specific histone demethylase 1A isoform X1
KO
K11450
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:
1.14.99.66
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsr03036
]
106540788 (KDM1A)
Enzymes [BR:
tsr01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.99 Miscellaneous
1.14.99.66 [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
106540788 (KDM1A)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
BRAF-HDAC complex
106540788 (KDM1A)
REST complex
106540788 (KDM1A)
Histone demethylases
106540788 (KDM1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Amino_oxidase
SWIRM
NAD_binding_8
DAO
Pyr_redox_2
Pyr_redox
AlaDh_PNT_C
FAD_binding_2
FAD_oxidored
HI0933_like
FAD_binding_3
Thi4
GIDA
Pyr_redox_3
2-Hacid_dh_C
DUF6827
Lycopene_cycl
Sec10_N
Motif
Other DBs
NCBI-GeneID:
106540788
NCBI-ProteinID:
XP_013911512
UniProt:
A0A6I9XCD1
LinkDB
All DBs
Position
Unknown
AA seq
871 aa
AA seq
DB search
MLSSSKKAAAAEAPVSGGGSGAGSDGASEAPAPPPPPPPPPPPALSASLGAAATAAEAGG
ASERTPRKKEPPRASPPGALSEPPPAGPGPAVGSETTGIAETPEGRRTSRRKRAKVEYRE
MDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPPPPPEEENESEPEEPSGQAGGLQDDS
SGGYGDCQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLYIRNRTLQLWL
DNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRVKPLPTKKTGKVI
IIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPM
AVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLN
NKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKDLLNKMVNLKEKIKELHQQY
KEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLS
SRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGL
DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPP
LPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKGTP
ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSY
SYVAAGSSGNDYDLMAQPITPGPAIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLRE
AGRIADQFLGAMYTLPRQTTPAATAQQTPPM
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcgtcgagcaagaaagcggccgccgcggaggctccggtaagcggcggcgggagc
ggcgcggggagcgatggcgcttccgaagcgccggcacccccgccgcctccgcctcccccg
ccgcccccggccctctccgcttctttgggggccgccgccacggccgcggaggccggtggc
gcctcggagcgaacgccccgtaagaaagaaccgccgcgcgcctcgccgcccggggcttta
tccgagccgcctcccgccggccccggccccgccgtgggctccgagacgactggaatcgcc
gagacccccgagggccgccggaccagccgccggaaaagggccaaggtggaatacagagaa
atggatgagagccttgctaatctttctgaagatgagtattactctgaggaggaaagaaat
gctaaagcagaaaaagagaaaaagctaccgcctccccctcctcctccacctcctgaggaa
gagaatgaaagtgagcccgaagaaccatctgggcaagcaggaggacttcaagacgacagt
tctggagggtatggagactgccaagcatcaggcgtggaaggcgcagctttccagagcagg
cttccacacgatcgaatgacatcacaagaagcagcttgttttccagatattatcagtggg
ccccagcaaactcagaaggttttcctttacatcagaaatcgaacgttgcagctctggttg
gataacccaaagattcagctgacctttgaggcaacactacagcaattagaagcaccctat
aatagtgatacggtacttgtccatcgagtacatagctacctggaacggcatggcttaatc
aattttggcatctacaaaagagtgaaacccctaccaaccaagaagactggcaaggtcatc
ataattggttctggagtttctgggttggcagcagctcggcagctccagagctttggaatg
gatgtcacactgctagaagcgcgggatcgtgtaggtggcagggttgctactttccgcaaa
ggaaactacgttgcagatttaggagccatggtagtaacaggacttggtggaaatccaatg
gctgtggtaagcaagcaagtaaacatggagttggccaaaataaaacaaaaatgtccactt
tatgaagccaatggacaagcggttccaaaggaaaaagatgaaatggtagagcaagagttc
aaccgtttgctagaagctacctcatacctcagtcaccagctggatttcaatgtcctcaac
aacaagcctgtttctcttggccaggccctggaagttgtcatacaattacaggaaaagcat
gtcaaggatgaacaaatagaacattggaagaagatagtgaaaactcaggaagaacttaaa
gatctccttaacaagatggtaaacttgaaagagaaaataaaagagcttcaccaacaatac
aaagaggcctcagaagtaaaaccacctcgagatattactgcagaattccttgtgaagagc
aaacacagagatcttactgccctttgtaaggagtacgatgagctagccgaaacacaagga
aaactggaagagaagctccaggaactagaagcaaatcctccaagcgatgtgtatttatca
tcaagggacaggcagattctcgattggcattttgcaaatcttgaatttgcaaatgccaca
ccactttccactttgtcattgaagcactgggaccaggatgatgattttgaattcacaggc
agtcacctgactgtgaggaatggctattcttgcgtgcctgtggctctggcagaaggatta
gatatcaaactgaatacagccgttcggcaggttcgctatactgcttcagggtgtgaagtg
atagctgtcaatactcgttctactagtcagacttttatttataagtgtgacgccgtgttg
tgtacccttcctttgggagtgctaaagcagcagcctccagcagtccagtttgttcctcct
cttccagaatggaagacatcagctgtacagagaatgggatttggaaaccttaacaaggtt
gtgctatgttttgatcgcgtgttttgggatccgagtgtgaatttgttcggccatgttggc
agtacaacagcgagcagaggagagcttttcctgttttggaatctttacaaaggtacaccg
atccttctggctttggtggcaggagaagcagcaggaattatggagaacatcagcgatgat
gtcattgttggacgctgccttgctatcctcaagggtatttttggcagcagtgctgtccca
cagcccaaagagacggtggtatctcgatggcgggctgatccgtgggcccgaggctcttat
tcctatgtagcagctggttcttcaggaaacgattatgacttgatggctcagccaattact
cctggaccagccattccaggagctccccagccaattcctcgtctcttctttgctggagaa
catacaattcgtaactacccagcgacagttcacggagcgctgctaagtggcctgagagaa
gctgggcgtattgcagaccagtttcttggtgcgatgtacactctccctcgccaaacgacc
cctgcggcaacagcacaacagacacctcctatgtga
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