Thamnophis sirtalis (common garter snake): 106542335
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Entry
106542335 CDS
T06107
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsr03000
]
106542335 (SOX6)
Transcription factors [BR:
tsr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
106542335 (SOX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
106542335
NCBI-ProteinID:
XP_013913509
UniProt:
A0A6I9XD32
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MESENNKLCSLYSFRNTSTSPHKPEESGRDRNELMTSVNFGTPERRKGSLADVVDTLKQK
KLEEMTRTEQEDSSCMEKLLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSAMITQ
LISLREQLLAAHDEQKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQ
IQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAA
SGLSPLQLQQLYAAQLASMQVSPGTKMPSTPQPPNTTGTLSPTGMKNEKRGTSPVTQIKD
DAAQPLNLSARPKTAEPVKSPTSPTQSLFPTCKTSPVNVGNKSGIPSPIGATLGRGSSLD
ILSSLNSPALFGDQDTVMKAIQEARKMREQIQREQQQQQQQPHIDGKLPSLNSMGLNNCR
AEKIRDNYLPFFMEDIKKASVVLKGCSIPPKNRKTLWRTGGERIEERTRFENLGPQLSGK
PSEDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDARGRSS
SEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQAR
LSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQIPIA
TGTGVVYPGAITMATTTPSPQMTSDCSSTSASPEPSTPVIQSTYSMKTDSGSLVGNEMIN
GEDEMEMYEDFEDDPKSDYSSENEAHEAVAAN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggagtcagaaaataataagttatgttccttatattccttccgaaatacttctacctca
ccacataagcccgaagaaagtggtcgtgatcgcaatgagctaatgaccagtgttaatttt
ggaactccagaacgccgcaaaggaagtcttgccgatgtggtggacaccttgaaacaaaag
aaactggaggagatgacgagaactgaacaggaggattcatcttgcatggaaaaactactt
tctaaagactggaaggagaaaatggagagattaaacacaagtgaactccttggagaaata
aaaggtacccctgaaagcttagcagaaaaagaacgacagctctctgccatgataacccag
ctcatcagtttacgggagcagcttttagctgcccatgacgaacagaaaaagctggcagca
tcacaaattgaaaaacagcggcagcaaatggatctcgctcgccaacagcaagaacagatt
gcaagacaacagcagcaacttctgcagcagcaacacaaaatcaatctcctgcagcagcaa
atccaggtccagggtcacatgcctcctctcatgatcccaatttttccacacgaccagcgg
acattggcagcggctgcagcagcccagcagggatttcttttccccccaggaataacttat
aaacccggtgataactatcctgtgcagttcattccatcaacaatggcagctgctgctgct
tctggactcagccctttacagctccagcaactctatgccgctcagttggccagcatgcaa
gtatcgcctggcaccaagatgccttccacgcctcagccgccaaataccacagggacgctc
tcaccaactgggatgaaaaacgagaagagagggaccagccctgtaactcaaattaaggat
gatgctgcacagccactgaatctttctgctagacccaagacagcagaacctgtcaaatcc
ccgacgtcgccaacgcagagcctcttccctacgtgtaaaacaagccctgtgaatgtgggc
aataaaagtggaatccccagtcccattggcgcgactctgggaagaggatcttctctagac
atactttccagtcttaactcacctgccctttttggggaccaggacactgtaatgaaagca
attcaggaggctcgaaagatgagagaacaaatccagcgggagcagcagcagcaacagcag
caaccacatattgatggaaagcttccctccctgaatagtatgggcctaaacaactgtaga
gctgaaaagataagggataattatcttcctttcttcatggaagatataaaaaaggcctcc
gtggtcctgaaaggatgcagtattcccccgaaaaatagaaagactctctggagaactggt
ggagagagaatagaggaaagaacacgctttgagaatttaggcccacagctatctgggaaa
cccagtgaagatggaaagctaggtccaggagtcattgatcttacaaggccagaagatgca
gaaggaagtaaagcaatgaatggctctgcagctaaactacagcagtattattgttggcca
acaggaggtgctactgtggctgaagctcgagtctacagagatgcccggggacgaagcagc
agtgagccgcacatcaaacgaccaatgaatgctttcatggtttgggcaaaggatgaacgc
aggaaaattcttcaagcttttcctgacatgcacaactccaacattagcaaaattcttggt
tcccgctggaaatccatgtccaaccaagagaaacaaccttattatgaagagcaagcacgc
ttaagtaaaatccacctagaaaaataccctaattacaaatataaacccagaccaaaacgc
acttgcattgttgatggcaaaaaactgcgcattggagaatataaacaactaatgagatct
cgacgacaggagatgaggcaattttttaccgtagggcaacagcctcagattccaattgcc
acaggaacaggagtggtctatcctggtgctattactatggcaacaactacaccatcacct
cagatgacatctgattgctccagcacttctgctagtcctgagcccagcacccctgtcatt
cagagcacttacagcatgaagacggacagtgggagcctggttggaaatgaaatgataaat
ggggaagatgagatggaaatgtacgaagactttgaggatgaccccaaatcagactatagc
agtgaaaacgaagcccacgaggctgtcgctgccaactga
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