Thamnophis sirtalis (common garter snake): 106542936
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Entry
106542936 CDS
T06107
Symbol
SYNPO
Name
(RefSeq) synaptopodin
KO
K21112
synaptopodin
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
106542936 (SYNPO)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
106542936
NCBI-ProteinID:
XP_013914279
UniProt:
A0A6I9XF42
LinkDB
All DBs
Position
Unknown
AA seq
1229 aa
AA seq
DB search
MLKTTLRPPCLQPQSNRAGPSRVDPNPHIIKNSKSDPAGGKSYLARLQGTGNDSSHGEQE
RKESARENLQKEPWRANGNVLPHKSSDNRPVSKEKGDSPWPVSDGMDSGINNKDDQSQEW
KVVKVKRVVLSPDEPRKANISRSASLSETELKEAKERSQRIVAQLTNPPSSNSKGVLLFH
RRKQRVNAFTLGAPKPINPERGVAEKGPKAITHPCALSHGEASHLKQTPKPNKELNASLC
LNSFGRWGQKVTMEKYEEELGVEHPLDNAQGLPWNKEKSETILYSTNPTSSKDIPEEEFQ
QIPLSVYLKENTGTASTNGIHEPLTEFGKMPMVEQGPIMGNTENIPAKTEDEATPKIEKK
DTILEKELYLLHMDRENNILDKEPYLPVVSEKNNNIPDKDLYAAVIDRENNIVLNTTPSE
PVIDRKENGELPYMEQEELVTDNENIFPTADTEKATNVCSDETSAQNHRQYCEVRLTLSK
PQPVKNRTARPFGTQSLAKILSPAEKSPVAEIPPPPTYAEAFSSPPPVTRVRSPPAYSAL
YPGQEQKILVPPETRSKDNSPGPQFREDKAPPPDKTGILEESAARRTPKKSMFTFVEKPK
MGPNPDLLNLVQTSDNKKKQGGAFPEDESFALGADASNFLTEDRSLHGPTQSLGDPPPEW
SSCLRSPKIQPRPKIISNQSLSEAKGKGAELFAKRQSRMQKYVIEAPSHPDIARSPSPTM
SLPPSWKYTSETHLSPVAFQPTLKSPSRSPKGPPVSFYNSNLTESEVSKKELEISKQQPY
QLRSPTFVRSPVKEPMRSVDPERGFMRQASSSTSPKTPSPLLYPPVQSSPSRTLPGLFAP
LPGNMFPLQKFRANAEISPEASFDHSSKILSPRAKGVFQAPRPSYSTKNAGIEPQERKTS
LPASPTWTPQPISRSSSSIEGWMSPAQTPESEDGLVEAFRAAHVMTPPPPMSPSWSERSL
SPFRQEIDQKSSRQMQVLLARNIINAARRKSSSPKLTGVENFRPFTPPVTCPNVSSTGGS
PKNRSTHTLSPIQSPKPTRMDGYRRVSLPVSAAPSQASASSSNSPRLLGIKSPSPLQSPK
AGRMNGNKCFTLPTRTGASQFFVSTNHNGPSIMGAHSESHQHPEPLQKPTIVGSHKAFTL
PANNSGISYSSPKNLDASSPTPQSPMMTTWSPVKRATSMSPTNSEASVDSDCSGVKSPSI
RSFNICPRGWNGSLRLKRGSLASEASCTS
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaaacaactctacgaccaccttgtctccaacctcaatccaaccgtgcaggcccc
agcagagttgacccaaatcctcacattattaagaactccaagagtgaccctgcaggaggc
aaaagctatttggcaaggctgcaaggaacgggaaatgatagtagccatggagagcaggaa
aggaaagagtcagccagagaaaatctccagaaggaaccttggagagccaatgggaatgtc
ctccctcacaaaagcagtgacaacaggccagtgtccaaagagaaaggagactctccgtgg
cctgtttctgatgggatggattctgggattaacaacaaggacgatcaaagtcaagaatgg
aaagtggtgaaagtgaaacgagttgtgctttctcccgatgagcctaggaaagcaaatatc
tcaagaagtgcaagcttgtctgaaacagagctgaaggaagcaaaagagaggagccaaaga
attgttgctcagttgaccaatccaccaagttccaattccaaaggagtcctgctgtttcac
agacgcaagcagcgagtgaatgcattcaccttaggagccccaaagccaatcaacccagaa
cgaggagttgcggagaaaggccccaaagctatcactcacccgtgcgctctgagccatggg
gaggcatcgcatctgaagcagactccaaagccaaacaaggagctgaacgcttcactctgc
ctcaatagttttggacgctgggggcaaaaagtcaccatggaaaaatacgaggaggaactg
ggtgtggaacatcccctagataacgcacagggccttccgtggaataaggaaaagagcgag
acgattctttattcaacaaacccaacatcctctaaagatattccagaggaagaatttcag
cagatcccgctcagtgtataccttaaagagaatacagggacagcttcaaccaacggaata
catgaacctctcactgagtttggaaaaatgcctatggttgagcaaggaccaattatgggc
aatacagaaaatatcccagctaagactgaggatgaggctacccccaagattgagaagaaa
gataccattcttgaaaaagaactgtaccttctgcatatggatcgggaaaataatattctc
gataaagaaccgtatctacccgtagttagtgagaaaaacaacaatatccctgacaaagat
ctgtatgctgccgtcattgatagggagaataatattgtcctcaacacgacaccgagcgag
ccagtcatagacagaaaggaaaatggagagctgccctacatggaacaagaggaattggtc
actgacaatgagaacatttttcccactgctgacaccgaaaaagccaccaatgtatgttct
gatgaaaccagcgcacaaaatcataggcagtattgtgaagtgcgcctcactttgtctaag
ccccaaccagtgaagaaccgaactgcaagaccttttggcactcagtcacttgctaaaatc
ctctcaccagcagagaagagtccagtggcagagattcctccaccacccacctatgcagaa
gcattttccagccctcctccggtgactagggtcaggtcaccaccagcttactcagcactg
tatcctggtcaagaacagaaaatcctggttccacctgaaactaggtccaaagacaacagc
ccaggacctcaattcagagaggataaagcaccacctccagataaaacaggcattctggag
gaatctgcagcccgcagaacacctaagaagtccatgttcacctttgtggagaagccaaaa
atgggtcccaatccagatcttttgaatttagtacagacatcagataataaaaagaagcaa
ggaggagcctttcctgaagatgaatcatttgcattgggtgcagatgcctctaactttcta
actgaagatcgatcattacatggacctactcagtcccttggagatcctccaccggagtgg
tcttcatgtttaagatcaccaaaaatacagcctagacctaaaataatctccaaccaaagc
ctatctgaggcgaaaggaaagggggcagaactgtttgccaagaggcaatcaagaatgcag
aagtacgtcattgaagccccatcccatccagatatagcaagatcaccttcacctacaatg
tctcttcctccatcctggaagtatacttcagaaactcatctctcccccgtggcattccaa
cctacactcaaaagtccatcaagatctccaaaaggcccccctgtatctttctacaacagc
aatttgacagaaagtgaggtctccaaaaaggagttggaaatctccaagcaacagccttac
cagcttcggtcacccacgtttgttcgttccccagtcaaagagcccatgagatctgtagac
cctgaaaggggttttatgagacaggcatcttcctctacttcgcccaagacaccttctcct
ctgttgtacccacctgtccagtccagcccaagcagaacattgcctggcctctttgctccc
ttacctggaaacatgtttccattacagaagttcagagcaaatgctgaaatatcacctgaa
gcgtcttttgatcattcttctaaaattttgtctccaagagctaaaggagtattccaagct
ccaagaccatcttactccaccaagaatgcagggattgagcctcaggaaagaaaaacatcc
ctgcctgcctccccaacttggactccacagccgataagtcgatcatccagcagcatagag
ggctggatgagtccagcccaaactccagaatctgaggatgggcttgtcgaagcctttcga
gcagcccatgttatgactccacctcctcccatgtctccatcctggagcgaaaggtctctg
tccccatttcgacaggagattgaccaaaagtccagccgacagatgcaggtgctgttggca
agaaatatcataaatgctgcccggaggaagagctcttctcccaaacttaccggagtagaa
aacttcaggcccttcacgccacctgtcacttgccccaatgtgtcatccactggtggaagc
cctaagaacagaagtactcatactctgagcccaattcagtcacccaaaccaacaagaatg
gatggctacagacgtgtgtccctcccagtctcagctgccccatcgcaggctagtgcatca
tcaagcaacagccccaggttgctaggcatcaaatctccaagtccactacagtcaccaaaa
gcagggaggatgaatggaaacaaatgcttcacgctgcctactagaactggagcgtcccag
ttctttgtctcaacaaaccataatggcccaagtataatgggtgctcattcggaatcacac
cagcatccagagccacttcaaaaacccacaatcgtgggcagccataaggccttcacattg
ccagcaaacaacagtgggatatcatatagcagcccaaaaaacctggatgcttcttctccc
actccccaaagtcccatgatgacaacatggtccccagtgaagcgcgccacttccatgtcc
cccaccaactcagaggcatccgtggactctgactgctctggggtcaagtcacctagcatc
cgcagcttcaatatttgtccacgaggctggaacggcagcctgaggctgaaacggggtagc
ctcgcatcagaagcatcttgtacctcttaa
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