Thamnophis sirtalis (common garter snake): 106543385
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Entry
106543385 CDS
T06107
Symbol
SCARF1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106543385 (SCARF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106543385 (SCARF1)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tsr04990
]
106543385 (SCARF1)
Membrane trafficking [BR:
tsr04131
]
Endocytosis
Phagocytosis
Scavenger receptors
106543385 (SCARF1)
Domain-containing proteins not elsewhere classified [BR:
tsr04990
]
Laminin domain-containing proteins
Laminin EGF-like domain-containing proteins
106543385 (SCARF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_EGF
EGF_2
C8A_B_C6_EGF-like
Motif
Other DBs
NCBI-GeneID:
106543385
NCBI-ProteinID:
XP_013914866
UniProt:
A0A6I9XLM7
LinkDB
All DBs
Position
Unknown
AA seq
781 aa
AA seq
DB search
MERRWVPPPPPPLLLLLLLSLPEPGRGSPELELGGKHVCAAEDSLPPALVCCPGWKQVGP
ECPLALCLGADACQEREICVRPAVCRCRPGFFGANCSARCPEQFWGPDCKQNCRCHPQGR
CHPSSGECSCHQGWWGPLCQSACLCGQRGHCHPVTGSCRCDPGWWAPDCRRQCQCNLSGS
HCDPATGRCLCRRGWWGRRCASLCSCSGSPCAQESGRCECMAGRWGVACQHFCQCVHGLC
SPQDGRCTCDAGFRGPTCTEPCPEGTYGPQCAHSCGHCRNRAPCSPTEGACLACDPGWNG
THCRQPCPSGLYGENCTQLCPRHCLQGEACQPQTGRCRNCEAGFMGARCEAPCPPGSFGE
GCQSSCPDCFHGSCDPASGTCLCQPGFWGSSCNQTCPEAFHGPNCSAACPCAGGRCHPVS
GDCPWEVQGQGALLAGILGPLLLLLGLCCCCCCHHRRHPCRAAASAVRAPGAEQDLFLPA
KHRLMARLPSLPSSLPCFSPGGSKLPRVIVAHRDPEVPFNPSFIEQTSAAWPSDGSFGSS
SSSSEGVNEETGGREGPQSALPPSEALPEGSLLPRTAALYPSPFAIPRTSSIAKGKRPSV
SFAEGTHFGPQSPRGPPEALNPTRKPTASDSSAQGAPPLEADHPTGASCHALGRSCYEEV
APAPWEDNGRPPGGHPSSSHRSWAGAEAPGAAAAEAGVHEPSITTIYVTVGQARSGRSGE
LPVVSSRGRSWAEAVSVEAEGALKPPLASGDPEEPVEPQGNIHQERELRLHSLYGINLNW
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggagcgccgttgggttcctccgccgccgccgccgctgctgctgctgctgctgctgagc
ctgccggagcccgggcgcggctccccggagctggagctcgggggaaagcacgtgtgcgcg
gcggaagatagtctgccgcccgccctcgtctgctgcccgggatggaagcaagtggggccc
gagtgccccctggccctctgcttgggcgccgacgcctgccaggagcgggagatctgcgtt
cgcccggctgtctgccgctgccgcccgggcttcttcggggccaactgcagcgcccggtgt
ccggagcagttctggggtccagactgcaagcagaattgccgctgccacccccagggcagg
tgccatccatccagcggagagtgcagctgccaccagggctggtgggggccgctctgccag
tcggcctgcctgtgtgggcagcgaggccactgccaccccgtcacaggcagctgccggtgt
gatccaggctggtgggcccctgactgtcgaaggcagtgccagtgcaatctctcgggctcc
cactgtgacccggccactggccgctgcctctgccgtcgaggctggtggggcaggcgatgc
gcctctctctgcagctgcagcggatcgccttgcgcccaggagtccggccgatgcgaatgt
atggcaggaaggtggggggtggcctgccagcacttttgccagtgtgtgcacggcctgtgc
tcccctcaggatggacgctgcacctgtgacgctggcttcaggggccccacctgcacagag
ccctgccccgaggggacctatggaccccagtgtgcccatagctgcggccactgcaggaac
cgagcgccctgctcccccacggagggggcctgcctggcctgcgaccccggctggaacggg
acccactgcaggcagccgtgtccttcggggctgtatggagagaactgcacccagctgtgc
ccccgccactgtctccaaggagaggcttgccaaccgcagacaggacgatgccggaactgc
gaggcaggattcatgggggccaggtgtgaggccccctgtccccccggctccttcggagag
ggctgccagtcctcttgccccgactgcttccacgggagctgcgatccggcctctgggacc
tgcctctgccagcctggcttctggggaagcagctgcaaccagacctgcccggaagccttc
catggccccaactgctctgcggcctgcccctgtgcagggggacggtgccaccctgtctcc
ggagactgcccctgggaggtccaaggccagggggccctcctcgcaggcatcctggggccc
cttctgctcctgctgggcctctgctgctgctgctgttgccaccaccgccgccatccctgc
cgtgcggcagcctctgcagtcagggcaccaggggccgagcaggatctcttccttccagcg
aagcaccgcctaatggccaggctgcccagcctcccttccagcttgccctgcttctcacca
gggggctcaaagcttccacgggtgatagtcgcccaccgagacccagaggtccccttcaac
cccagtttcatcgaacaaacgtccgcggcctggccctcggacggctcctttggctcctcc
tcctcctcctccgagggagtcaatgaagaaacggggggccgcgaagggcctcagtctgct
ctccctcccagtgaagccttgccagagggcagccttctccccaggacagcagccttgtac
ccctcgcccttcgccatccctcgcacctccagcatcgccaagggcaagcggccctccgtc
tcctttgcagaagggacccactttggccctcagagccccaggggccccccagaggccctc
aaccctacccggaagccaacggcctctgacagctcagcccaaggagctcctcctctggag
gccgaccaccccacgggggcctcatgccacgccctgggcagaagctgctacgaggaagtg
gcaccagctccctgggaggataatggccggccccctggaggccacccttccagcagccac
aggagctgggctggcgcggaggcaccgggggcagctgctgcggaagctggtgtccatgag
cccagcatcaccaccatttatgtgaccgtgggccaagccagaagtggcaggtctggggag
ctgccagtagtgagcagtagggggcggtcttgggcagaagctgtgtctgtagaggctgaa
ggggcactgaaacctcccttggcaagcggagacccggaagagccagtggagcctcaagga
aacatccatcaagaacgagagttaagactgcattcactgtatggaatcaatctgaattgg
gaataa
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