Thamnophis sirtalis (common garter snake): 106543760
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Entry
106543760 CDS
T06107
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106543760
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106543760
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106543760
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
106543760
NCBI-ProteinID:
XP_013915312
UniProt:
A0A6I9XN18
LinkDB
All DBs
Position
Unknown
AA seq
1689 aa
AA seq
DB search
MAASPAGLRGHLVCFLALLLRELPRARADGLVDVLQAFGVREGKNGVTIAAGICTQRNGS
EETDLAFRLENRTHFITPTRQLFPDGHFPVDFSILATMRALKGSQSFLFSLCDERGVQQL
GVEIGRSPVFLYEDQLGFPAPEDYPHFHRVNLADGKWHRIALSVKGESVSLNIDCEDAIT
LPLKRSKQPVVSIDGVTLLGARRPDEDIFEGDLQQLLLVPDPAAAAQYCQDYMPDCNRQL
IYKLQTQDAEENIPQRKGKKGKGKGRGKGRKKGRGKKKRNKESLEKSSFSPTSGENETPT
DISPMKAATEFWGKDPNEELGILTSTTMTANFNLTDNYEDLLGEEYLINENRDLNANVTY
REFDERLDNKDYEDYYDRRGASEAEHYDPAERIEATILFPEQQPNLKGQKGEAAVVEPGM
IFEGPAGYPGPQGEMGPMGSPGPPGFPGDPGERGSPGFPGLPGADGLRGPPGTMLMFPFQ
FRGDLLKGPSVSFQEAQAQAILQQAKLSMKGPPGPMGLTGRPGPLGLPGKSGQKGDSGDS
GPQGSPGIQGPIGPPGKVGKRGRSGADGGRGLPGETGPKGDRGFDGHPGPPGVKGHRGDI
GKPGLPGPPGNDGSKGSEGVQGPRGQPGEAGVRGLPGSRGNPGSFGQTGITGIDGPPGHK
GNMGIPGEPGPPGQQGNPGSHGLPGPQGPIGLPGEKGPPGKPGIPGLAGMDGPPGHPGRE
GPAGEKGTQGPSGAAGPVGYPGPRGVKGAFGIRGLKGSKGEKGEDGFPGFKGDMGPKGDW
VSNILPSIPSMKYLVFLVNVVCQDLQENRDQRYACFPYDVYGLLHFSMHSAGYGPVGKDG
LSGHPGQRGEAGFHGKTGPPGPTGVVGPQGNTGETGPMGERGHPGSPGPPGEQGLPGIAG
REGAKGDPGPGGIPGIPGPTGIKGFTGARGPVGEKGPIGLKGAEGPLGPAGSMGPPGERG
PSGAAGGIGLPGRGGNPGPPGPAGEKGAPGDRGPMGPSGRDGILGPVGLPGPAGPPGLAG
EDGYKGEMGGPGQKGSKGDKGDAGPPGPTGIQGPIGHPGSAGVDGEPGRRGQQGMFGQKG
DEGVRGLPGVSGPPGLQGMPGITGEKGESGETGLMGPPGAPGARGPQGSSGGDGPQGQRG
GVGQPGAVGEKGEPGEAGDPGPPGQPGQQGVKGDVGEKGDSGQSGAAGPPGKKGPPGEDG
SKGNMGPIGFPGDPGPTGDPGPPGPPGAFGEVGPPGPPGKRGPFGPAGREGRQGEKGIKG
ESGIDGPSGKMGPVGPQGPPGQPGSEGLRGIPGAAGEPGLLGAPGQAGPPGPMGPTGLPG
LKGDPGYKGEKGHAGLIGLIGPPGEMGEKGDQGLPGNQGTPGTKGDSGNIGPHGPPGPPG
SPGHSGPLGEKGNKGSLGPIGPKGDPGAPGTPGPPGRPAELQNPMPMESGRTSRQDWEIE
EQGDAPGEGDIDPDADGLAEVLAALSSLRDEVEQMRCPLGTLDSPARVCKELQFCHAHLK
DGEYWIDPNQGCSRDAFKVYCNFTAGGETCLFPDKKFEAVRLAAWNKEQPGSWFSTFKRG
KKFSYVDADGNPVLVTQLTFLRLLSAVARQNFTLLCQNMAAWYEANTSSHMKALHFRAFN
DVELMHNSTETPIHAVYDGCQVRKGQERTVLQMVTQHVEHLPLIDVAVQDFGDTNQKFGF
ELGPVCFSG
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagccccgcgggactgaggggccacctggtctgcttcctggccctcctgttg
cgagaacttccccgggcgagggcagatggccttgtggatgtgctccaggcgtttggtgtg
cgggagggcaagaatggggtcaccatcgctgctgggatctgcactcagaggaatggatcg
gaggaaactgacctggccttccgcctggagaatcggactcatttcatcacccccaccagg
caactcttccctgatggccacttcccagtggacttttcaatattagccacaatgagagca
ctcaaaggcagccaatcttttttgttttccctgtgtgatgaacgtggtgtacagcagctt
ggtgtagagattggacgttcccccgtctttctctatgaagaccagctgggtttcccagcg
cctgaggactatcctcattttcacagagtcaacttggctgatggcaaatggcaccgcatt
gctctaagtgtgaaaggtgaaagtgtatctctgaacattgactgtgaagatgctataaca
ttacccctgaagcgaagcaagcagccagttgtcagtattgatggggtcaccttgcttggg
gcacgtcggccagatgaagacatttttgagggtgatctccaacaattacttcttgtgcca
gacccagcagctgctgcccaatattgccaggattacatgcctgattgcaacagacaactc
atctacaaattgcagacccaggatgcagaagagaacattccacagaggaagggcaagaag
ggcaaaggcaaaggaaggggcaagggcaggaagaaaggtagaggcaagaagaagagaaac
aaagagtccctcgagaagtcctcgttcagtccaacctcaggcgagaatgagactccaact
gatatcagtccgatgaaggcagctactgagttctggggaaaggatcctaatgaagagctt
ggcattctcacttctaccactatgacagccaacttcaaccttacagataattatgaggac
cttcttggagaagagtatttaatcaacgaaaatagagacttgaatgccaatgtcacttac
agagaatttgatgagagacttgacaataaagattatgaggactactatgaccgacgaggg
gccagtgaagcagagcactatgatccagctgagcgcattgaagccaccatcctatttccc
gagcagcaaccaaatctgaagggacagaaaggggaggcagcggtcgttgaacctggtatg
atttttgaaggaccagctggatatccaggtccacagggagagatgggtccaatgggatca
ccagggcccccgggatttccaggagatcctggcgagaggggatcaccaggcttcccaggc
cttccaggagcagatgggcttcgcggacctcctgggacaatgctcatgtttccattccag
tttcgtggtgatttgcttaaaggaccttcagtatctttccaggaggcccaggcccaggcc
attttacagcaagccaagctttccatgaaaggacctcctggcccaatgggactcacagga
aggccaggaccactaggtctaccaggaaaatcaggacaaaaaggggattcgggtgactcc
ggaccccagggttcccctgggatacaaggaccaattggacccccagggaaagttggcaag
cggggtcgttcaggagctgatggtggcagaggactcccaggagaaacaggacccaagggt
gacaggggctttgatggtcacccaggaccccctggagtaaagggacacagaggagatata
ggaaagccaggcctacctgggcctcctggaaatgacggttctaagggctctgaaggtgtg
caagggcccagaggacagcctggggaagctggtgtacgtggtttgccaggctcgcgaggt
aatcctggttctttcggccagacgggtattactggtattgatggtcctcctggacataag
ggcaatatgggtattccaggtgaaccaggcccacctgggcaacaaggaaaccctggatct
cacggcttgcctggtcctcagggccccattggacttccaggagaaaagggtccaccagga
aaaccaggaataccaggactggctggaatggatggacctccgggtcatcctggaagagaa
gggccagctggagagaaaggaactcagggtccatctggtgcagcaggaccagttggttac
ccaggtccacgaggagtcaagggggcatttggaataaggggcctgaaaggcagcaaaggt
gagaagggtgaagatggattccctggcttcaaaggtgatatggggcccaaaggcgattgg
gtgagcaatattcttcccagtattcccagtatgaaatatctggtattcctggtgaacgtg
gtttgccaggacctacaggaaaaccgggatcaaaggtatgcctgttttccatatgatgtg
tatggccttctacatttctccatgcacagtgcaggatatggacctgtaggaaaagatggt
ctatcaggacatccaggccagcgtggtgaggcaggatttcatggcaaaactggcccaccg
gggccaacaggagttgtggggccacagggaaacacgggagaaactggtcctatgggggag
agaggccacccaggctcccctggtcctcctggagaacaaggcctgcccggtattgctggt
agggaaggtgccaagggtgatcctggacctggtggcatcccaggtattccagggcctact
ggaattaaaggcttcacaggagcccgtggtcctgttggagagaaaggaccaataggcctg
aaaggagcagaagggccacttggtccagcaggctccatgggtcctcctggggagcgaggt
ccctctggagcagctggaggcataggactaccaggaagagggggtaatcctggaccacct
ggacctgcaggggagaaaggagcaccgggtgatcgaggacctatgggtccatctggtcgt
gatggaatcctaggtccagtggggcttccagggccagctgggcctccaggacttgctgga
gaagatggttacaaaggagaaatgggtggcccgggacagaagggaagcaagggcgacaaa
ggagatgcgggtcccccaggaccaaccgggatccagggtcctattgggcatccaggatct
gctggagttgatggagagcctggacgccgagggcagcagggcatgtttggccaaaaagga
gatgaaggagtccgtggtttgccaggtgtcagtggcccacctggtttacagggaatgcca
gggatcacaggtgaaaagggcgaaagtggtgaaactgggttaatgggtccacctggagct
ccaggggcccgaggtccacaaggttccagtggtggagatggcccacaaggtcagcgtggt
ggggtaggccagcctggtgccgtaggtgaaaagggtgagccaggggaagcaggggatcct
ggaccaccagggcagccaggccaacaaggagtgaaaggtgatgttggtgaaaaaggagat
tctggccagtctggagcagcagggccacctgggaaaaaaggccccccaggagaagatgga
tccaaagggaacatgggtccgataggattccctggtgaccctggtccaactggagatcct
ggtcctcctggtccacctggagcttttggggaagtaggtcctcctgggccaccagggaag
aggggaccttttgggccagctggacgtgaaggtcgacagggtgagaaagggatcaagggt
gaatctggtatagatggtccctcggggaaaatggggcctgtgggcccgcaaggacctcca
ggccaacctggttcagaaggtctgcgtggaattcctggtgcagcaggtgaacctggtcta
ctgggagctccaggacaggcaggacccccaggtcccatgggtcctacagggctccctggt
ctcaaaggtgatcctggctacaagggagagaagggtcatgcaggactcattgggttgatt
ggccctccaggtgagatgggtgaaaaaggtgaccaggggctgccagggaaccagggaaca
ccgggcactaaaggcgattctggcaatattggacctcatggtcctccaggcccacctgga
tctcctggccactcaggccctctgggagaaaaaggcaacaaagggtctttgggacctatt
ggaccaaaaggtgatccaggggcaccagggacaccaggaccaccaggccgccctgctgaa
ttgcagaatccaatgcccatggaaagtgggcgcacaagccgccaggactgggagattgaa
gaacagggggatgctccaggggaaggggatattgatcctgatgctgatggactggcagaa
gtcttggcagctctaagctctctacgtgatgaggtggagcaaatgcgatgcccactgggc
actctggatagtccagccagggtctgcaaggagcttcagttttgtcatgctcatctcaaa
gatggtgaatactggattgatccaaaccagggatgcagccgagatgccttcaaagtttac
tgtaatttcacagctggtggagaaacctgcttattccctgacaagaaatttgaggctgta
cgacttgccgcctggaacaaggagcaaccaggaagttggttcagcactttcaaaagaggc
aaaaagttctcctatgtggatgcagatggcaatcctgtgctggtcactcaactcacattc
ctacgcctgctgagtgctgttgcccggcagaactttaccctcctctgccaaaatatggct
gcttggtatgaagccaacaccagcagccacatgaaggctctgcattttcgggctttcaat
gatgtggagttgatgcacaacagcacagaaactcccatccatgccgtgtatgatggctgt
caggtacgcaaaggtcaggagcggacagttctacaaatggtgacgcaacacgtggagcat
ctaccattgattgatgtggctgttcaggatttcggagataccaatcaaaagtttggcttt
gaactcggcccagtctgcttcagtggctga
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integrated database retrieval system
