Thamnophis sirtalis (common garter snake): 106545319
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Entry
106545319 CDS
T06107
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B
KO
K12821
pre-mRNA-processing factor 40
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106545319 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsr03041
]
106545319 (PRPF40B)
Spliceosome [BR:
tsr03041
]
Complex A
U1 snRNP components
U1 related factors
106545319 (PRPF40B)
Complex B
106545319 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
Glyco_hyd_101C
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
106545319
NCBI-ProteinID:
XP_013917312
UniProt:
A0A6I9XTA1
LinkDB
All DBs
Position
Unknown
AA seq
822 aa
AA seq
DB search
MYLCLQSTPDSGSPGQPAPFPSASRPPPPILPPPFMPPPGIPPPFPPMGMPPMGPRPPPM
PPMPPGMMPPPPMIQPMPGPPPLGQMPTMVPPMLSGMIMPGVPAGPIPVSGGAAPVTDPS
NTTVTQAASVIPMQQNVILGGSPVLDTGRKKPAWSEHKAPDGRIYYYNAETKQSSWEKPD
ELKSKAEILLSRCPWHEYRSETGKSYYYNTQSKESRWTRPRELDDIEALMKEEEEEAERQ
HLPQQQEPPLSGPASPTPSSAATSDTEGTGGVEETPGTEGVPAAVEEEVTSSCDPLRRDE
EDRGSGSAWSNKEEAKQAFKELLKDKGVPAGASWEQTMKIISSDPRFSALPKLSEKKQAF
NAYKAQRDKEEKEEARLRAKEAKEELQRFLEEHSKMNSTTRYRKAEQMFGELEVWAMVPE
RDRKEIYDDVLFFLAKKEKEHAKQLRKRNIQALKSILDSMSRVSFQTTWSEAQQYLMDNP
SFAEDEDLQNMDKEDALICFEEHIRTLEREEEEERERGRLRERRQQRKNREAFQHGLLPA
ALLFTGSTPLDLFKFYVEDLKARFHDEKKIIKDILKDRSFSVEINTTFEDFAHVISFDKR
AATLDAGNIKLTFNSKLKKGKERKEREKGKERKNGSESGSDHPHRAAKRKKRNHSESAGS
GASSSPDSDQLIGSICITPSPSIRPPSQDVSEILACCHGITAGSGLRSSQGKAGTTPSPC
LHTTSCLPAEHSPRRAKRQKKKSKKKRHKSNSPESEAEHKEPSRAEEWERGKAPLRPEGR
GHSPPRGTRRERSGWDTSESEELSEGELERRRRTLLQQLGDQ
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgtatttatgcttgcagtcaactccagattcaggcagtcctgggcagccagctcctttt
ccttctgcctcacgaccaccaccaccaattctaccccctccatttatgcctcctcctggg
atcccaccaccatttccacccatgggaatgcccccaatgggaccacggccacctcctatg
ccgcctatgccccccggcatgatgccacctccccctatgattcaacctatgcctggacca
ccacccctgggtcagatgcccacgatggtgccaccaatgctgtctgggatgatcatgccg
ggggtgccagctgggcctattcctgtttctggaggagcagctcctgttactgacccatcc
aacaccacagtgactcaagcagcatctgtgatccccatgcaacaaaatgtaattcttggt
ggctctccagtgttggatacagggcgaaagaagccagcatggagtgagcataaagcccct
gatgggcggatctattattataatgctgaaaccaaacaatcaagttgggaaaagccagat
gaacttaagtctaaggcggagatattgctgtcgcgctgtccttggcatgagtatcgctca
gaaactgggaaatcctattactacaacactcagagcaaggagtcacgctggaccaggcca
cgagagctggatgacattgaagcattgatgaaggaggaagaggaggaagcagagaggcag
cacctacctcagcaacaggagccgccattgtcgggccctgccagtcccaccccgtcttcc
gcggccacctcagacacggaaggcactgggggtgttgaagagaccccagggactgaggga
gtcccagctgctgttgaggaggaggtcacaagcagttgtgatcccctccggagagatgaa
gaagatcgtggcagtggcagtgcctggagcaacaaagaggaagcgaaacaagcttttaag
gagctgctcaaagacaagggtgttccagctggtgcatcctgggaacagaccatgaagatt
attagcagtgacccccgtttcagtgctttgcccaagctgagcgagaagaagcaggcattc
aatgcctacaaggctcaacgggacaaagaagaaaaggaagaggcccggctgcgggcaaag
gaggcaaaggaagaactgcagcgcttcttggaagaacacagcaaaatgaattctaccacc
cgctacaggaaagctgagcaaatgtttggtgagctggaagtgtgggccatggtgcctgaa
agggatcgcaaggagatctatgatgacgttcttttttttctggccaagaaagagaaggag
catgccaagcagctgcgcaaaaggaacattcaagctctgaagagtatcctggacagcatg
agccgtgtcagcttccagaccacttggtctgaggcccagcagtacctaatggacaacccc
agctttgccgaagacgaagacttgcaaaacatggacaaggaggatgccttaatctgcttt
gaggaacacatccggactttggagagggaggaggaggaggaacgtgaacggggccgatta
cgggaaaggcgtcagcaacggaagaacagggaagccttccagcatgggctacttcctgct
gctcttctattcacaggctccaccccgcttgacctcttcaaattctatgttgaagatctg
aaggcccggttccatgatgaaaaaaagatcatcaaggatattctcaaggaccggagcttc
agtgtggaaataaatacaacctttgaggactttgctcatgtcatcagttttgacaagcgt
gctgccacgctggatgctggcaacataaagttaactttcaacagcaaattgaaaaaagga
aaagaaaggaaggaaagggagaaaggaaaggaaaggaaaaacggctcagagtccggttca
gatcatccccaccgagcagccaagcgcaagaaacgaaaccactcggaatctgccggctca
ggggcctcgtcttcccctgactcagatcaattgataggtagcatctgcatcaccccatcc
cccagtattcggccaccttcccaggatgtctctgagattctggcctgctgccatggaatc
actgctgggagtgggctgaggtcatcccaaggaaaggctgggacaaccccgtctccctgt
ctgcacacaacttcctgtcttcctgcagagcacagccccaggcgtgccaagaggcagaag
aagaagagcaagaagaaacggcataagtcgaacagccctgaaagcgaagctgagcacaag
gagccaagccgggcggaagagtgggagcgagggaaggcacctctgcgacctgaggggagg
ggccactcccctccccggggcactcggagggagcggagtggttgggacacctcagagagc
gaggagctgagcgaaggggagctggaacgtcggcgtcggactctgctgcagcaactgggt
gaccagtaa
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