Thamnophis sirtalis (common garter snake): 106545810
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Entry
106545810 CDS
T06107
Symbol
SRRM1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106545810 (SRRM1)
03015 mRNA surveillance pathway
106545810 (SRRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106545810 (SRRM1)
03041 Spliceosome [BR:
tsr03041
]
106545810 (SRRM1)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106545810 (SRRM1)
Spliceosome [BR:
tsr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
106545810 (SRRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
106545810
NCBI-ProteinID:
XP_013917942
UniProt:
A0A6I9XV23
LinkDB
All DBs
Position
Unknown
AA seq
904 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEDKENREKRDRSRSPRRRKSRSPS
PRRRSSPVRKERKHSHSRSPHHTAKSRSVTPPPVKKEETPEPEPSMKVKETLIQEATSTS
DILKVPKIDPMPDTKEISPERVSKKEREKEKEKARPRSPSRSRSRSKSRSRSPSHSRPRR
RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRIPPPPRHRRSRSPVRRRRRSSASLSGSSS
SSSSSRSRSPPKKPPKRVVSSPPRKTRRLSPSASPPRRRHRPSPPPSPPPKPRRSPTPQQ
SNRTRKARSSVSPNRTSAPKHKNIEKRESPSPAPKTRKVELSESEEDKGGKMAAADSVQQ
RRQYRRQNQQSSSDSGSSSSSEEERPKKSNVKNGEVGRRRRHSHSRSPSPSPRKWQKESS
PRMQMGKRWQSPIVKSRRRRSPSPPAARRRRSPSPAPPPRRRRSPSPPRRRSPSPPPRRH
SPTPRRYSPPIQRRYSPSPPPKRRTASPPPKRRASPSPQPKLRVSRSPPPKQRSSPPAKR
RSPSASSKHRKSSPPSRSNREPRSPLQNKRHSPSPQPRPSRTSASPPLLRRGPSSSPPRR
QSPSPTSRPIRRVSRTPEPKKSKKASPPSPQSARRGSSSRSASVSPEPPPKKHPAPPSPA
RSASPSAHWSPVAPAKKAKSPTPSPSPVRNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKH
KKEKAAVAAAMAAFTTPAEEDQEKNVEPKKETESEAEDNLDDLEKHLREKALRSMRKAQV
SPPS
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaggcttcttccgcggtacaagtgcagaacaggataatcgcttcagcaacaaa
cagaagaagctgctaaagcaactgaaatttgcagaatgccttgaaaagaaagttgacatg
agcaaggtaaacctggaagtaatcaagccatggataacaaagagagtaacagaaatcctt
ggatttgaagatgatgtagtaattgaatttatattcaatcagctggaagtgaagaatcct
gattccaaaatgatgcaaatcaacttgactggatttttgaatgggaaaaacgcgcgagaa
ttcatgggagaactatggccgctgctgttaagtgctcaagaaaacattgctggtattcca
tctgcttttttggagctgaagaaagaagaaataaaacaaagacagattgaacaggaaaaa
ttggcttcaatgaagaaacaagatgaagacaaggataagcgagacaaagaagataaagag
aacagagaaaagcgggaccgctctcggagtcccagaagacgcaaatcaagatctccttcc
cctagaagacgttcatctcctgttaggaaagagaggaaacatagccattctcgatcaccc
caccacacagccaaaagtcgcagtgttacacctccaccagtaaaaaaagaagagacacct
gaaccagaaccttccatgaaagtaaaagaaacattgatccaggaggccacatctaccagt
gatatcttgaaagtccctaaaattgaccctatgccagatactaaggaaatatctccagaa
agagtttccaaaaaagaaagggaaaaagaaaaagagaaggctcgtccaagatctccatct
cgatctaggtcaagatcaaagtctcgatcacgttccccatctcattcaagaccaagaaga
cgtcatagatcacgatctaggtcttattcaccaaggaggcggcctagcccaaggaggcgc
ccatctcctcggagaagaaccccaccaagacgtattccacctccacctaggcatagaaga
agcagatctcctgtgaggcggaggagaagatcatcagcatcattatcaggaagtagttca
tcctcatcgtcttcacgttctcgatcaccaccaaagaaaccgcctaagagagtggtctcc
agccctcctcggaaaacaagaaggctttctccttctgcaagccccccaagacgaagacac
cgaccatccccacctccaagtcctccccccaaaccccgcaggtcaccaacaccacagcag
tctaatcgtacaagaaaagcccgtagttctgtttctcccaataggacttcagcacctaaa
cataaaaatattgaaaaaagagaatctccctcacctgccccaaaaacaagaaaagttgaa
ttgtcagaatcagaagaagacaaaggtggtaaaatggcagctgcagactccgtgcagcaa
agacgacagtacagaaggcagaaccagcagtcttcatcagattctggttcatcatcatct
tctgaagaggaacgaccgaaaaagtcaaatgtgaaaaacggtgaagtgggtagacgacga
cggcattcgcattctcgcagcccatctccttctccacgaaagtggcaaaaagaatcttct
cctcggatgcagatgggaaagaggtggcagtcaccaattgttaaaagtaggaggaggcga
agcccctccccaccagcagccagaagaagacggtctccttctcctgccccccctccaaga
cgtcgcaggtcaccatcacccccacgaagaaggtctccttcaccaccccctcgccggcat
tctcccacacccagaagatactctcctcccatccagaggcggtattctccttctcctcct
ccaaagagacgaacggcatctcctcctcccaaaagaagggcttctccttctccgcagcct
aagctcagagtctctcgctctccaccaccaaaacaaagaagctctccacccgcaaaaaga
cgttcgccatctgcatcttccaaacacaggaaaagctcccctccaagcaggtccaaccgg
gaaccccgctctccactgcagaacaagcggcattcaccttcaccacagcctagaccttca
cggacctctgccagccccccattgttgcgtaggggtccttcttcatcacctccgcgaagg
cagtcaccatctccaacctctaggcccatcagaagagtctcaaggactccagagcccaag
aagtcaaagaaggcttctccaccaagtccccagtctgcaagaaggggttcttcatctagg
tcagcttcagtgtcccctgaaccaccccccaagaagcatccagcacctccctctcctgct
cgatcagcatctccttctgctcactggtcaccagtagcacctgcaaagaaggctaaaagt
ccaactccaagcccatcacctgtacgaaattctgatcaggaaggaggtggtaaaaagaag
aagaaaaagaaggataagaagcataaaaaggataagaagcacaagaaacacaaaaagcat
aagaaagaaaaggctgctgtagctgctgctatggctgcttttacaacacctgcagaggaa
gatcaagaaaaaaatgtagaacccaaaaaggagactgagagtgaagcagaagataacctg
gatgacttggaaaaacacctgcgcgagaaagctctgaggtcgatgaggaaggcgcaggta
tctccaccatcttag
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