Thamnophis sirtalis (common garter snake): 106545836
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Entry
106545836 CDS
T06107
Name
(RefSeq) collagen alpha-1(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106545836
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106545836
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106545836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
106545836
NCBI-ProteinID:
XP_013917983
UniProt:
A0A6I9Y3K5
LinkDB
All DBs
Position
Unknown
AA seq
1702 aa
AA seq
DB search
MDTHTRWKRRSWLKRPGSLALLLLATLAHSRAAEPADLLKVLDFHNLPDGISKTTGFCTS
RRSSKGADVAYRVTKDAQLSAPTKQLFPASPFPEDFSILTTVKAKKGGQAFLISIYNEQG
IQQVGVELGRSPVFLYEDHMEKPGSENYPLFRGINLSDGKWHRVAFSVHKKNVTLILDCK
KKVTKLLDRSDHPIIDVNGIIVFGTRILDEEVFEGDIQQLLIVSDHQAAYDYCEHYSPDC
DTAVPDVPHSQDPNPDEYYPDGNENLEVEGETYYYEYPYYEDLDEAGKATPTTAQPVETD
EVAREVIDTTEIGGPRGEKGQKGEPAIIEPGMLLEGPPGSEGPAGLPGPPGTTGPAGPMG
DPGERGPPGRAGLPGADGLPGPPGTMLMLPFRFSGGGDGGSKGPLISTQESQAQAILQQA
RFQCANTEAPSPPVRKKSTRKPPVLILLWFHLFQGPRGVQGPPGPSGKPGRRGRAGSDGA
RGMPGQTGPKGDRGFGGLAGMRGDKGNRGDPGPSGPPGAPGEDGDRGDDGEVGPRGLPGE
PGPRGLLGPKGPPGPPGPPGIAGMDGHSGPKGNVGPQGEPGPPGQQGSPGAQGLPGPQGP
IGAPGDKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGTQGPAGPQGPLGYPGSRGVKGA
DGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRSGPNGEPGP
LGPPGEKGKLGIPGLPGYPGRLGPKGSIGFPGFLGANGEKGGRGTAGKPGPRGQRGPTGP
RGERGQRGITGKPGPKGNSGGDGPPGPPGERGPSGPQGPTGFPGPKGPPGPPGKDGLPGH
PGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGT
KGDPGPAGLPGKDGPAGFRGFAGDRGLPGPIGPVGLKGNEGPPGPPGPAGSPGERGPAGT
AGPIGLPGRPGPQGPTGPAGEKGTPGEKGPQGPAGRDGIQGPVGLPGPAGPVGPPGEDGD
KGEIGEPGQKGSRGDKGEQGPPGPIGPQGPIGQPGPAGADGEPGPRGQQGLFGQKGDEGP
RGFPGPPGPVGLQGLPGPPGDKGETGDVGQMGPPGPPGPRGPGGPPGADGPQGPAGGIGN
PGSVGEKGEPGESGEPGLPGDSGPPGPKGERGEKGEAGPSGSAGPPGPKGPPGDDGPKGS
PGPVGFPGDPGPPGEPGPAGQDGPTGDKGDDGEAGQTGSPGPTGEPGPSGPPGKRGPPGP
AGPEGRQGEKGAKGESGLEGPPGKTGPVGPQGPPGKPGPDGLRGIPGPVGEQGLPGSPGP
DGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGGSGPKGE
QGIQGPSGPLGPPGSPGLPGPPGPKGAKGSSGTTGPKGETGHPGLPGPPGPPGEVIQPLP
IQSSKRTRRNIDASQLMDDVNSDNYVDYTDGMEEIFGSLNSLKLEIEQMKHPLGTQHNPA
RTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETCIFPDKKSEGARITSWP
KETPGSWFSEFKRGKLLSYVDADSNPIGVVQMTFLRLLSASAHQNITYNCFQSVAWHDAT
VGNYEKAMRFLGSNDEEMSYDNSPFIRAVFDGCATKKGYQKTVLEISTPKVEQVPIVDIM
FNDFGEASQKFGFEVGPACFLG
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atggacacgcacacccggtggaaacggcggagctggctgaagcggcccgggagcctggcg
ctgctcctgctcgccaccctcgcccacagccgcgcagctgagcctgcagatctattgaag
gtattagatttccataatttacccgatggcatctcaaaaacgacgggcttctgcaccagc
aggcggtcttccaagggagcagatgtggcctatcgcgtcaccaaggatgcccagctgagt
gccccaaccaagcagcttttccctgcgtctccatttcctgaagatttctccatcctgacc
acggtgaaagccaagaagggcggccaggctttcttgatctccatttacaacgaacaaggc
atccagcaagtcggtgtggagctggggcggtccccggttttcctatacgaggaccacatg
gagaagccaggctccgagaactaccctctcttccgcggcatcaacctctcggatggcaag
tggcatcgagttgctttcagtgttcataagaagaatgtcactctgattttggactgtaaa
aaaaaagtcaccaaattgctggaccgaagtgaccatcccatcattgacgttaatggcatc
attgtctttggaacaaggatcttggatgaggaagtatttgagggcgacatccaacaactg
ctcatcgtctcggaccatcaagccgcctatgactactgtgaacactacagcccagattgt
gacacagccgtgccggatgtgcctcactctcaggacccaaaccctgatgaatactaccca
gatgggaatgagaacctggaagttgaaggagaaacttactattacgaatacccctactat
gaggacctcgacgaggcaggcaaagccaccccgaccactgcccaacctgtggaaaccgat
gaagtagcccgggaagtgattgacaccaccgagatcggtggacctcgaggtgaaaagggg
cagaagggggagccggcgatcattgagccagggatgctgctcgaagggccgcctggctca
gaaggcccagccgggctgccaggccctccgggaacaacggggccagcggggccaatgggg
gatcctggagaaaggggcccacctggacgtgcaggacttccaggcgctgatggcctgcca
ggcccacccgggacaatgctgatgctgccgttccggttcagcgggggtggagacgggggc
tcgaaaggccccttgatctccacccaggagtcccaagcacaagccatcctgcagcaggcc
aggttccagtgtgccaacactgaagctccaagccctcctgtgcgaaagaaaagcaccagg
aaacctccggttctgattctcctttggttccatttatttcagggtccacgaggggttcaa
ggccctccaggtccatcagggaaaccaggacggcggggacgggctggcagcgatggtgct
cgggggatgccaggccaaacgggaccgaagggtgaccgaggtttcggtggcctggctggg
atgcgtggagacaaggggaacaggggtgatcctggcccctcaggccccccaggagcccca
ggtgaagatggtgaccggggtgatgatggagaagttgggcccagaggtctccccggtgaa
ccgggtccccgtggtttgcttggaccgaagggacctccggggcccccaggacctccgggc
attgctggcatggatggacactccggcccgaaggggaatgtgggtcctcaaggtgagcct
ggacccccaggtcaacagggaagtccaggtgctcagggtcttcccggccctcaaggtccc
atcggagctcccggggataagggtcccctggggaaaccgggtcttcctggcatgcctgga
gcagatggtcccccgggccatcctggcaaagaagggcctccgggcgagaagggcacccag
ggtccagctggccctcagggcccacttgggtatcccggctcccgtggagtgaagggcgct
gacggcatccggggcttgaaagggacgaagggtgagaagggcgaagatggcttcccagga
ttcaaaggcgacatgggcattaaaggcgacaggggtgaaattggccctcctggtccacgg
ggtgaggatgggccggaaggcccgaaaggtcgcagcggccccaacggagagccaggccca
ctaggtccacctggagaaaagggaaagcttggcattcctggtctgcctggataccctgga
agacttggccccaagggttccattggatttccagggttcctgggagccaacggagagaaa
ggaggaaggggcaccgctggcaaaccaggaccaagaggacagcgaggtcccacgggcccc
cgaggagaacgcggccagcgaggcatcactgggaaacctggcccaaagggcaattccggt
ggggatggacctccaggacctccgggtgaaaggggaccttcagggcctcaaggaccaaca
ggctttcctggaccaaaagggcctccggggcctccaggaaaagatggattgccaggccat
cctgggcagagaggggaaacgggcttccaagggaagacgggcccacctgggcccccaggt
gttgttggtccacagggccccacaggagaaaccggcccgatgggggaacgtggccatccg
ggccctccagggcccccaggtgaacagggacttcctggcttggctggaaaagaaggaacc
aagggtgacccaggccccgccggtttgcccgggaaagatggcccagcaggattcagaggc
ttcgccggagaccgaggactccccggcccaattggacctgtggggctgaagggcaacgaa
ggcccaccggggcctcctggaccagcaggctctccaggggagcgaggtcctgcaggaaca
gctggcccaattggactgccaggacggcctggaccccaagggcccactggccctgcgggt
gagaaagggaccccgggtgagaaaggcccccaaggcccggctggacgagacggcatccag
ggaccagttgggcttccaggtcctgccggcccggttggccccccaggggaagatggtgac
aagggtgaaattggtgaaccaggacagaaaggaagcagaggggacaaaggagaacagggt
ccaccaggtcctattggtccacagggcccgattggccaaccaggtccagctggagccgat
ggagagcccggcccacgaggacagcaagggcttttcggacagaagggcgatgaaggacca
agaggatttcctggccctccagggccagttgggttgcagggcttacctgggcctccaggt
gacaagggagaaactggggacgtcggccaaatgggtcctccaggtccccccggacccagg
ggcccagggggaccccccggagctgatgggccacaaggtcccgcaggagggattggaaat
ccaggatctgttggtgaaaagggagaacctggagaatcaggagaacctggccttcccgga
gactctggaccaccaggtcctaaaggagaaagaggggaaaagggggaagcaggcccctct
gggtctgctgggcccccaggccccaaaggtcccccaggagatgatggccccaaagggagc
ccgggtccggttggatttccaggtgatccaggccccccaggtgaacctggcccagctggt
caggatggcccaacaggcgataagggcgatgatggggaagctggtcaaacggggtctcct
ggtccaaccggagagccgggtccttctggccctccaggcaagagggggccacctggacct
gcaggacccgaaggccgacaaggagagaaaggggcgaagggtgagtctggattggaagga
cctcctgggaagacgggtccagttggtcctcagggacctccaggaaagccaggtccagat
ggacttcggggaatacctggcccagtgggtgagcaagggcttccaggttcaccaggccca
gatggacctcctggccccatggggccacctggcttacctggcctgaaaggggattcgggt
ccaaagggagaaaagggtcatcccggactgattggtctcattgggcctcccggcgagcaa
ggagaaaagggagatcggggactgccgggacctcaaggaggatcgggacctaaaggagaa
cagggcattcaaggtccatctggccctcttggcccacctggttccccagggttgccgggc
ccccctggtccaaaaggtgctaaaggatcttccgggacaacaggtccaaagggcgagact
ggtcatcccggcctaccaggacctcctggtcctccaggagaggtgatccaacctcttccc
atccagtcctccaaacggactcggaggaacatcgatgccagccagctgatggatgacgtc
aattccgacaattatgtggactacacagatggcatggaggagatctttggctccttgaac
tctctgaaactggaaatcgagcagatgaaacacccgctgggcacccagcacaacccagca
cggacttgcaaagacttgcagctgtgtcacccggacttcccagacggagaatattgggtg
gacccgaatcaaggctgctcccgggattccttcaaagtttactgtaattttactgctggt
ggggaaacttgcatcttcccagataagaaatctgagggggctagaattacttcatggcca
aaggaaaccccgggctcctggttcagtgaattcaagcgcggtaaactgctctcctacgtg
gatgctgacagcaaccccattggggtggtacagatgaccttcctgcgtctcctgagtgca
tccgcccaccaaaacatcacctacaactgcttccagtctgtggcctggcatgatgccact
gtgggcaactacgagaaggccatgcgcttcctgggctccaacgacgaagagatgtcgtat
gacaacagccctttcatcagggcggtcttcgacggctgtgcaaccaagaagggctaccag
aagacggtcttggaaatcagcacccccaaagtggagcaggtccccattgtcgacatcatg
ttcaacgactttggcgaagcgtctcagaagtttggattcgaggtggggccggcgtgcttc
ctgggctga
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integrated database retrieval system
