Thamnophis sirtalis (common garter snake): 106546071
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Entry
106546071 CDS
T06107
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03020
RNA polymerase
tsr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106546071 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
106546071 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106546071 (POLR2A)
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106546071 (POLR2A)
Enzymes [BR:
tsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106546071 (POLR2A)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106546071 (POLR2A)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106546071 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_6
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
106546071
NCBI-ProteinID:
XP_013918320
UniProt:
A0A6I9Y9A2
LinkDB
All DBs
Position
Unknown
AA seq
1667 aa
AA seq
DB search
MKRMSVTETGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIEL
AKPVFHVGFLGKTMKVLRCVCFFCSKLLVDSNNPKIKDILTKSKGQPKKRLTHVYDLCKG
KNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ
EKKILLSPERVHEIFKRISDEECFILGMDPKYARPEWMICTVLPVPPLSVRPAVVMQGSA
RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQ
KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF
AEIVAPFNIDRLQELVSRGNSQYPGAKYIIRHNGDRIDLRFHPKSSDLHLQIGYKVERHM
CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE
TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW
DGKVPQPAILKPRPLWTGKQIFSLIIPGHINCVRTHSTHPDDEDSGPYKHISPGDTKVIV
ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIG
DSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD
KTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVGPSSHHSGSHLVGRTSEFSSEGPGFK
SPCRKLVWKETQKTPADKETEVLAPQQLQRTHFFSKALLEGLRLDFNERLPLGILGVEGP
TSCSVRRPCFRRVEGATRYISLFSRFKFDYANERALRRTLQEEMVKDILSNAHIQNELER
EFEKMKEDREVLRVIFPTGDSKVSLTHLPQLPSGGVYISPTRNHGSSVSSRFLLPSLPGV
KDLSKKLVIVNGDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIE
SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK
PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWV
NVYYEMPDFDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAE
KLVLRIRIMNSDENKMQERNCGGGAGISLTCISSSLLFAGSGMTPGAASFSPSAASDASG
YSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGVYTPQSPSYS
PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgtcggtgaccgaaacgggcatcaagtacccagagaccacagaaggcggg
cgccccaaactcggagggttgatggatcctcgccaaggggtcattgaaaggaccgggcgg
tgccagacatgcgcaggcaacatgaccgaatgtcccggccattttggccacatcgaactg
gccaagccggttttccacgttggctttttaggaaaaaccatgaaagtcctccggtgcgtt
tgtttcttctgctccaaactgctggtcgattcgaacaatccgaagatcaaggacatcctg
accaagtcgaaaggccagccgaagaagcggctaacccacgtctacgatctctgcaaaggg
aagaacatctgcgagggaggagaagagatggataacaaatttggggtggagcagcccgaa
ggggacgaggacctcactaaggaaaagggccacggggggtgcggacgctaccagccgcgg
atccgccgctcgggcctggagctgtacgccgagtggaagcacgtgaacgaggactcgcaa
gagaagaaaatcctgctcagccccgaacgggtccacgagatcttcaagcggatctcggac
gaggaatgcttcatcttgggcatggaccccaaatacgcccggccggagtggatgatctgc
accgtgctccccgtccctcccctctccgtcaggccggccgtcgtcatgcaaggctcggcc
aggaatcaggatgacttgactcacaagctggccgacattgtgaaaatcaacaaccagttg
cggcgcaacgagcagaacggggcggccgctcacgtcatcgcggaagacgtcaagctgctc
cagttccacgtggccaccatggtggacaatgaactgcccgggctgccccgcgcgatgcag
aaatccggccggcccctcaagtccttgaagcagcgcctgaaagggaaagaaggccgtgtg
cgagggaacctgatgggcaagcgggtggatttctccgcccggacggtcatcacgcccgat
cccaacctctccatcgaccaggtgggcgtgccacgctccatcgccgccaacatgaccttc
gccgaaatcgtggcacctttcaacatcgacaggctgcaggagctggtgagccgagggaac
agccagtatcccggtgccaagtacatcatccggcacaacggagacaggattgacctccgc
ttccacccgaagtccagcgaccttcacctgcaaattgggtacaaggtggagagacacatg
tgtgacggagacatcgtcattttcaaccggcaacccacgctacacaaaatgtccatgatg
ggccaccgagtccgtatcctaccctggtccaccttccggctcaatctcagtgtgaccacc
ccgtacaacgccgacttcgacggcgacgaaatgaacctccaccttccccagtcgttggag
acccgggcggagatccaagaactggccatggtgccccgtatgatcgtcacgccccagtcc
aacaggcccgtcatgggcatcgtgcaggacaccctgacggccgtccgcaagttcaccaag
agggacgtcttcctggagaggggggaagtgatgaacctgctgatgttcctctccacctgg
gatggcaaagtgccccagccggccatcctgaagcctcgcccgctctggaccgggaagcaa
atcttctccctcatcatcccgggacacatcaactgtgtccggacccacagcacccatccg
gacgacgaagacagcggcccctacaagcacatctctccgggagacaccaaggtgattgtg
gagaacggagagctgatcatgggcatcctgtgcaagaagtcgctgggcacctcagccggc
tccctggtccacatctcctacctggagatgggccatgacgtcacccgcttgttctacagc
aacatccagaccgtcatcaacaactggctgctgattgaaggacacaccattggtattggg
gactccatcgctgatgccaagacctaccaggacatccagaacactatcaagaaagccaag
caggatgtgatagaggtcatcgagaaagcccacaacaacgagctggagcccacccctggc
aacaccctgcgccagacctttgagaaccaggtcaaccgcatcctgaacgacgcccgagac
aagactggctcctccgcccagaagtccctctcggagtacaacaacttcaagtccatggtg
gtctcgggggccaaaggctccaagatcaacatctcccaggtaggaccctcctcccaccac
tccggatctcacttagtcggtaggacatcggagttctcatctgagggtccagggttcaag
tccccgtgcaggaaattggtttggaaagaaactcagaagaccccggcagataaagagacc
gaagtcctggcccctcagcagctccagaggactcacttcttctcaaaagctttgttggaa
ggcttaaggcttgattttaacgaacggctgcctctggggatcctgggagttgaaggtccc
acaagctgctcagttcggagaccctgctttagaagagttgaaggagccacccgatatata
tccctcttttccaggttcaagttcgactacgccaacgagcgggctctgcgccgcaccctc
caagaggagatggtgaaggacatcctcagcaacgcccacatccagaacgagctggagagg
gagtttgagaagatgaaggaggaccgggaggtgttgagggtcatcttccccacgggagac
agcaaggtgagcctcacccacctgcctcagcttccctccggtggcgtgtacatctccccc
accaggaaccatggctcctccgtctcttcacgcttccttcttccttccctcccaggcgtg
aaggacctcagcaagaaactggtgattgtgaacggggacgaccccctgagcaagcaggcg
caggagaacgccaccctgctcttcaacatccacctgcgctccaccctctgcagccgtcgg
atgatcgaggaattccggctgagcggggaagccttcgactggctgctgggagaaattgaa
tccaagttcaaccaggccattgctcaccctggtgagatggtgggggccttggccgcccag
tccctgggagaacctgccacccagatgaccctcaacaccttccattatgctggagtctcc
gccaagaacgtgaccctgggggtgcctcggctgaaggaactcatcaacatctccaagaag
cccaagaccccttctctgacggtcttcctcctgggacagtctgctcgggacgctgaaagg
gccaaggacatcctttgccgcttggagcacaccacccttcgcaaggtcacggccaacacg
gccatctactacgaccccaaccctcagaacaccgtggtggccgaggaccaggagtgggtg
aacgtctactacgagatgcccgacttcgacgtcacccgcatctccccttggctgctgcgg
gtggagctggaccgcaaacacatgacggaccggaagctcaccatggagcagatcgccgag
aagatcaacgccggctttggagatgacctcaactgcatcttcaacgatgacaacgccgag
aagctggtgctgcgcattcgaatcatgaacagcgacgagaacaagatgcaggagagaaat
tgtggggggggagctggtatctctctcacctgcatctcttcctccctcctctttgcaggg
agcggaatgacccctggggccgccagtttctcccccagcgcggcttccgatgccagcggt
tacagccccgggtattcccccgcctggtcgcccactcccggctcccccggctctccggga
ccttccagcccttacattccgtctccagggggcgccatgtctcccagctactccccaacc
tctcccgcctacgagccacgctcgcccggggtgtacaccccgcaaagccccagctacagc
cccacctctccttcctacagccccacctctccttcgtactcgccgactagtcccaattac
agccccaccagccccagctacagccccacctccccgagttactcgccgacgtcgcccagc
tacagcccaacgtcgcccagctacagccccaccagccccagctacagcccaacgtcacct
agttattctccaaccagccccagttacagcccgacgtcgcccagctacagcccgacgtca
cccagctacagcccaaccagtcctagttacagcccgacgtcacctagttattctccaacc
agccccagctacagcccaacatcgcccagctacagcccgacgtctcccagctacagcccg
acctctcctagctacagcccaaccagcccgaattacagcccgacttctccaaactacacc
ccgacttctcccagctacagcccgacttctcccagctacagcccgacctctcctaattac
accccgacgtctccaaactacagcccgacgtctcccagttactccccgaccagcccgtcc
tacagtcccacctcgcccagctactccccctccagcccccgctacaccccacagtcgccc
acctacaccccctcgtcgcctagctacagccccagctcgcccagctacagcccgacgagc
cccaagtacaccccgaccagcccgtcctacagccccagctctccggaatacaccccgacc
agccccaagtacagcccgaccagccccaagtacagcccgacttcgcccacctacagcccg
accacgccaaagtacagcccgaccagccccacttactcgccgacgtcgcccgtctacacc
ccgacgtcgcccaagtacagcccgacctcgcccacctactcgcccacctcccccaagtac
agcccgacctcgcccacctactcccccacctcccccaaaggctccacctactccccgacc
tctccgggctacagccccacatcgcccacctacagccttaccagcccggccatcagtcca
gacgacagcgacgaagagaactga
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integrated database retrieval system
