Thamnophis sirtalis (common garter snake): 106547333
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Entry
106547333 CDS
T06107
Symbol
COL9A2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106547333 (COL9A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106547333 (COL9A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106547333 (COL9A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tsr00535
]
106547333 (COL9A2)
Proteoglycans [BR:
tsr00535
]
Extracellular matrix (ECM) proteoglycans
Others
106547333 (COL9A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106547333
NCBI-ProteinID:
XP_013919937
UniProt:
A0A6I9XZS6
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MGPKGTRGLPGIDGKDGFPGTPGVKGSVGQPGLPGPLGHSGMAGLPGTPGSKGGPGQKGE
PGTRGPSGLPGPSGKIGEPGPPGAVGLQGIAGVKGDRGDRGPTGPPGPQGKVGPKGDQGA
PGIPGPQGLPGVKGSKGFPGKSGSKGDIGNPGVGGLSGGKGQKGELGEPGPKGQQGICGE
PGFPGPPGDIGAPGVRGFPGSPGPRGPNGERGVPGMPGLRGGPGRDTGDQHIVDVVIKML
QEQLAELAVSAKRETVGGSGMMGPPGPPGPPGSPGSQGPHGHPGSRGPPGILGAVGQIGN
TGPKGKRGEKGDQGEPGHGHQGMPGPPGLPGPPGQPGQALNGKHGERGVPGAPGEAGRPG
LPGPSGLPGFCEAVVCLGASASAQLTEVGSVKGPSY
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgggccccaaaggaacacggggtcttcctgggattgatggcaaagacggatttcctggc
actcctggagtgaagggaagtgtgggtcaaccaggccttccagggcctttgggacacagt
ggaatggccggtttgccaggcactcctgggagcaaaggtggtcctggacagaagggcgaa
ccagggacccgtggcccgtcgggcttacctgggccatctgggaaaattggggagcccggt
ccaccaggagcagtgggtctccaaggcatcgctggtgtgaaaggcgatcggggtgacagg
gggcctacgggacctccaggtcctcagggaaaagtgggccctaaaggagaccagggcgcc
cctggaattccagggccacagggactcccaggagttaaaggcagcaagggcttcccgggg
aaaagtggatccaaaggcgatatcgggaatcctggtgttggaggcctttctggaggaaag
gggcagaagggtgaattgggggaacctggaccaaaggggcagcaaggcatctgtggggag
cctggttttcctggacctcctggagacatcggggcacctggagttagaggtttcccagga
tctcctggccctcgaggaccgaatggggaacgtggtgtacctggaatgcctgggttgcga
ggtggcccaggcagggacactggagatcagcacattgttgatgtcgtgatcaagatgcta
caagagcaactggccgagttagcagtgagtgcgaaaagagaaactgtgggtggaagtggc
atgatggggccacctggccctccggggcctcctgggtcacctggctcccaaggcccccat
ggacatcctggttcccgtggtcctccaggaatcctaggagcggttggacagataggcaac
actggacccaaaggaaagaggggtgagaaaggagaccaaggagaacctggccatggacat
caaggaatgccagggcctccaggcctaccaggtccccctggtcaacctggtcaagctctc
aatggcaaacacggagagcgaggtgttccaggtgccccaggagaagcaggccgtcctggt
ttacctgggccttctggccttcctgggttttgcgaggcagttgtctgccttggtgcctct
gcctcagctcaactaactgaagtaggttctgtcaaaggaccttcctactga
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