Thamnophis sirtalis (common garter snake): 106550350
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Entry
106550350 CDS
T06107
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106550350 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106550350 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106550350 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsr04147
]
106550350 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106550350 (COL4A1)
Exosome [BR:
tsr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106550350 (COL4A1)
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106550350 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106550350
NCBI-ProteinID:
XP_013923723
UniProt:
A0A6I9YHB7
LinkDB
All DBs
Position
Unknown
AA seq
1654 aa
AA seq
DB search
MGSSLAGPGIALLLAVLLVPGRRSGSEAAGGCSGCGKCDCNGVKGQKGERGLPGLQGLVG
FPGVQGPEGPPGASGTKGDTGEPGLPGTKGTRGPPGSAGYPGNPGLPGIPGGDGPAGPPG
IPGCNGTKGERGSHGPPGLPGLPGNLGLPGVPGIKGDPGEIISILPGGFQKGEKGLPGHT
GQPGTPGLPGNTGPIGPPGPPGRHGIPGPPGPPGEKGHMGLSFQGPQGEKGERGVMGPPG
PQGTDTQHQEKGTIVIQGDKGDPGEKGDDCIPGRPGKDGEDGEKGERGLPGHPGITGHPG
VLGSKGDKGIVGPPGPPGIVTDERDEEVFGEKGDSGPQGFPGRKGEPGPPGFQGSPGPPG
PPGQAIPGPAGFPGERGRKGDQGPPGTSLPGPKGRDGFTGPRGSPGPPGLPGGTDGIGCE
RGLPGDPGLQGTPGQSGYTGERGEKGEKGESCSECDGAGFPGPTGPQGPQGEQGIPGLPG
AKGDRGSPGFEGIPGVAGPPGVPGLIGIPGPKGEPGEIFYDSIVKGEKGEPGLPGHPGTP
GKEGRPGKDGVPGSPGPKGASGTIGLKGDRGLPGISGLPGSPGDRGFPGPPGVGNPGPQG
DKGDKGVPGIPGTSGLPGPKGEAGRVISLPGPPGARGFPGPAGNPGFQGDKGDPGIPGRP
GLPGEKGLAGPPGIGFPGPSGPPGFPGQPGPQGSRGEKGEHGSQGVPGASGAKGQKGEAG
LGLPGPKGFPGPRGRDGIPGSKGDQGYPGVSGEKGFPGIPGQPGSQGELGPPGLPGVQGS
PGEPQMGSPGPPGPSGQSGPPGPIGPPGIKGERGHPGIPGLDTPGPKGDKGTPGTQGLSG
VPGLPGLPGLQGQQGHPGVPGVKGEMGIMGTPGIQGLPGPIGTPGTPGEKGSLGFPGVAG
PRGDPGLKGEKGEVGLPGEPGKMEKVDMENMKGQKGEQGDKGTKGLIGEKGTPGISGRPG
MPGKDGDPGLPGQAGPKGDSGSPGFQGEAGFPGEKGSMGEMGLPGLPGEKGFQGLPGEAG
QSGFPGVKGEKGRKGDSGLPGIGFPGAPGEKGEQGWPGNSGLPGDKGEKGIPGISGIPGS
PGIKGQSGLPGSPGVPGLAGEKGQKGTPGFSGVPGLKGQPGDPGVQGPHGTAGEKGEPGF
DGIPGTPGSKGDSGLPGRGFPGIPGGKGERGPKGDVGSPGSPGSSGVPGTKGDIGFVGPQ
GPPGQPGIPGLPGNIGEGPKGDRGPQGQPGLQGLPGPQGFPGVSGLPGEKGEKGSQGWPG
QSGQPGPKGDLGVQGIPGSPGFPGTTGQKGDMGPPGIPGPQGLKGSSGFLGSKGVQGDQG
FPGNKGLPGPPGPPGPFQLLKGEPGLPGTPGPAGPKGIPGFPGPKGQQGVTGPSGLTGPP
GIQGIDGTPGQKGDKGPVGPTGPRGFPGPPGPEGMPGVMGPPGRPSMAHGFLVTRHSQTT
EDPSCPFGTRVMFYGYSLLYVQGNQRAHGQDLGSAGSCLRKFSTMPFLFCNINNVCNFAS
RNDYSYWLSTPEPMPMSMAPLTGDSIRPFISRCAVCEAPSMVIAVHSQTVQIPPCPEGWN
SLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFVECHGKGTCNYYANAYSFWLAT
IERNEMFKKPTSSTLKAGELHSNISRCQVCMKRT
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgggtagcagcctggcggggccgggcattgcgctcctcttagcggtgctgctcgttcca
gggcggcggtccgggtcggaggcggcggggggttgttctggttgtggaaaatgtgactgc
aatggagtaaaggggcaaaaaggtgaaagaggtttgccaggtttacaaggcttagttgga
tttcctggagtacaaggaccagaagggcctccaggagcctccggaacaaagggtgatact
ggagaaccaggactaccaggaacaaaaggaacgagagggcctcctggttcagcaggctat
cctgggaatcctggccttccgggcatccctggaggtgatggcccggctggtcctcctggg
atcccaggatgcaatggaacaaagggagaaagaggttctcatggcccacctggtttacct
ggcttacctggcaatctcggacttccaggagttccaggaataaagggagacccaggagaa
attatttcaatcctgccaggtggttttcaaaagggtgagaaaggattgcctggacatact
ggacaaccaggaacacctggacttccaggtaatactggtcctattggaccacctggacct
cctggaagacatggtattcctgggccacctggacctccaggtgagaagggtcatatgggc
ttgagtttccaaggtccacaaggggaaaagggtgagcgtggtgtcatgggcccccctggt
ccccaaggaacagatacccagcatcaagagaaagggaccatcgtcatacagggagacaaa
ggtgatcctggtgaaaaaggtgacgattgcattccaggaaggcctggaaaagatggagag
gatggagagaagggagaacgtggattacctggtcatccaggaattactggacatcctggt
gtacttggatctaaaggagacaagggcatagtaggacctcctggacctccaggaattgtt
acagatgaaagagatgaagaagtctttggtgaaaagggtgattcaggacctcaagggttt
ccaggaaggaaaggtgaaccaggtcccccaggttttcaaggtagtccagggccaccaggt
cctccggggcaagctattccaggaccagctggttttcctggtgaaagagggagaaaaggt
gaccaggggcctcctggaacatctttgcctgggccaaaaggaagagatggatttacagga
cctcgtggttcacctgggcctccaggcctccctggtggaacagatggaattgggtgtgaa
cgtggtctacctggtgacccaggtcttcaaggcaccccaggacagtcaggctacacagga
gaaagaggagagaaaggtgaaaaaggggaaagctgctcggagtgtgatggagcaggtttt
cctggaccaacagggccccaagggcctcaaggggagcaaggcattccaggactaccgggt
gctaaaggtgatagaggctctcctggatttgaaggcattccgggagtggcaggacctcct
ggtgtacctggtttgataggaatcccaggaccaaaaggagaacctggagagattttctat
gactccattgtaaaaggtgaaaaaggagaaccaggattacctggacatccaggtactcct
ggcaaagaaggaaggccaggaaaggatggtgtccctggcagcccaggacctaaaggagca
tctggaaccattggattaaaaggagaccgtggactcccagggataagtggtttaccaggg
tctcctggagacagaggtttccctggtcctccaggagttgggaatcctggaccacagggt
gataaaggagataagggagttcctggaatccctgggacctctggacttccaggtcccaaa
ggtgaggctggacgtgttatttctctccctggtccccctggagcgagaggttttcctgga
cctgctggaaatccaggcttccaaggtgacaagggagacccagggatcccaggaagacct
ggtctgccaggtgaaaaaggtctggcagggcctcctggaattggatttcctggcccttca
gggcccccaggctttcctggtcagccaggtccacaaggttcaagaggagagaagggagaa
catggttcccaaggcgtgccaggtgcatctggcgccaaaggacagaagggcgaagctgga
ttaggtctcccaggtcctaaaggttttcctggtccccgaggacgagatggcattcctgga
tcaaaaggtgaccagggatatcctggtgtgtcaggggagaaaggatttcctggcatacct
ggtcagccaggatctcaaggtgaattgggtcctcctggattaccaggtgtacagggttcc
cctggtgaaccccagatgggctctcctggcccccctggcccttcaggacaatctgggcct
ccaggaccaataggaccaccaggaatcaaaggtgagagaggccacccgggtatccctggg
ctagatacgccaggacctaaaggagacaaagggacgccaggaacacaaggtctgtcaggt
gtgccagggttgccaggcttacctggcttacaggggcaacaaggacatccaggtgttcca
ggagtgaaaggagaaatgggaattatgggtacccctggaattcaaggtctacctggtcct
ataggaactcctggaactccaggtgaaaaaggtagcctaggttttcctggagtggcagga
ccaagaggtgatccaggtttaaaaggtgaaaaaggcgaagttggactcccaggggagcca
ggaaaaatggaaaaggttgacatggaaaacatgaaaggccaaaaaggagaacaaggagat
aaaggaacaaaagggttaataggagaaaaaggaactccaggaatctctggcaggccagga
atgccaggaaaggatggggatcctggtttaccaggccaagcaggaccaaaaggagattcg
ggcagtccaggattccagggtgaagcaggatttcctggagaaaaaggatcaatgggtgaa
atgggtttaccagggctacctggagaaaaagggtttcaaggccttccaggtgaggcgggt
cagtcaggatttcctggagttaaaggtgaaaaaggacgtaaaggagactctggacttcct
ggaattggcttccctggagctcctggtgagaagggtgaacaaggatggccgggcaattca
ggcttacctggagacaaaggtgaaaagggtattccaggtatttcaggcatccctggatcc
ccaggcatcaaagggcagtctggccttccaggttctccaggtgttccaggactggcaggt
gaaaagggacagaaaggaaccccaggctttagtggtgttccaggcttaaaaggacaacca
ggtgaccctggagtacagggcccacatggaactgctggagaaaaaggtgagcctggtttt
gatggaatcccaggcactcctggttcaaaaggtgattcaggtcttccaggtagaggattt
cctggaattccaggtggaaaaggagaaagaggtcctaaaggagatgtgggctctccaggg
agtcctgggagttcaggagttcctggcacaaagggagacattggatttgttggcccacaa
ggtcccccaggccaaccaggcattcctgggttgccagggaatattggagagggccccaag
ggtgaccgggggccccaagggcaaccagggcttcaaggacttcctgggcctcaaggattt
ccaggagtttcaggattaccaggagaaaaaggagaaaagggaagtcaaggttggccaggg
caatctgggcaacctggacccaaaggtgacctgggagttcaaggaatccctggcagtcct
ggtttccctggaactactggtcaaaaaggtgacatgggacctcctggaattccgggtccc
caaggtctaaaaggttcttctggttttttgggatccaagggagtacaaggtgaccaaggg
tttcctggaaataaaggtctgccaggcccaccaggtcctccaggcccttttcaacttctg
aaaggtgaaccaggcctacctggcactccaggccctgctggccccaaaggaattcctggt
tttccaggaccaaaaggacaacaaggtgtcacaggaccatcgggtttgactggcccccca
ggaatacagggaattgacggcacacctggtcagaaaggagataagggccctgtgggtcct
acaggtccgagaggctttcctggtccccctggtcctgaaggcatgccaggggtgatgggt
ccaccgggcagaccctctatggctcacggtttcctcgtgaccaggcacagccaaaccaca
gaggacccctcctgtccatttgggacaagggtcatgttctatggatattctttgctttat
gtacaaggcaatcaacgggcccatggtcaggacttaggctctgctggaagctgtctacgt
aaattcagcacaatgcctttcctattctgcaacattaacaatgtctgcaattttgcttca
agaaacgattattcttattggttgtcaactcctgagcccatgccaatgagcatggctcct
ctaacaggagacagcatcaggcctttcatcagcaggtgtgctgtgtgtgaggctccttct
atggtgatagcagtccacagccaaacagttcaaatcccaccatgtccagaaggctggaac
tctctgtggatcggctactcctttgtgatgcacaccagtgcaggggcagaaggctccggc
caagcactggcctccccgggctcctgccttgaagagttccgcagtgcaccctttgttgaa
tgccatggaaagggcacctgcaattattacgccaatgcctacagcttctggcttgccaca
attgagaggaatgaaatgttcaagaaacctacatcttccacactgaaggctggagaactg
cactcaaatattagccgctgccaagtttgtatgaaaagaacataa
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integrated database retrieval system
