Thamnophis sirtalis (common garter snake): 106550399
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Entry
106550399 CDS
T06107
Name
(RefSeq) biorientation of chromosomes in cell division protein 1-like 1 isoform X1
KO
K27262
biorientation of chromosomes in cell division protein 1-like 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106550399
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
106550399
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COMPASS-Shg1
Motif
Other DBs
NCBI-GeneID:
106550399
NCBI-ProteinID:
XP_013923776
UniProt:
A0A6I9YHW2
LinkDB
All DBs
Position
Unknown
AA seq
2881 aa
AA seq
DB search
MSGNGGTLAAAAAAPTAATSPPEQPPPPPPPPPPPPPPQPPPPPPPPGSSAGAAEPELVS
LILNRLKSQGLFDQFRRDCLADVDTKPAYQNLRQRVDNFVSNHLATHTWSPHLNKNQLRN
NIRQQVLKSGMLESGIDRIISQVVDPKINHIFRPQVEKAVHEFLVTMNHPEEINPSFALP
EDKLEASVLLQGVPAITPNMNMANDALSILETITSLNQEASATKASTEASNTKTNERFSK
KLLSQHSLDGSIERDRNAEDVADGEKTPYISTEESFEPVVNCEDISNSFSSNEEGKTISK
EASSLLNPSKENFQESDEQKSKLVDKCDRKLESLEKGEKKKEKKEKSDKKVDFSKRNGDD
VKAKEEKTIKDKETEVIKHLTLEKNTSKKNESTKEVLEDSDVDILSDITVSSVHTSDLSS
FEEDSEDLLSDSTEEGEIVSDDEEDECSQIKAKSEAEGTNDKKTKSGRHAYIHKPYLYSK
YYSDSDDERTVEQRRQSVAKEKEERFLRRQLNREKLEEKRKQKAAEKTKSLKIGHQGKSI
QNLEDLSGRSFDLKTGGASIKDVLKEQRFLEKKVALSRKRKRESRHDEEAWKKKCEQPDE
YFGEFEKINEGTEKLSSKEIKVSQGKNGNKVVRKIAELGLSPEENKSEIKVEKEHKRRTS
ASFQLEVIQPDVEGESQFEMAEVSPEEPQKQRNVLKNEKHIKKDESETPGVKNVLKKEVR
PSKDKNEKERSLSEDKSLMKYKCKGENVQKTSENVENVPSEKNMRNEETVVKNNQLAKVL
PDDKTEKKNKHRSERKASVNSKEMKNISEKNETMRKETNRKERQLSTEKLKAEYKSRKFP
NDSRPPKESQSASKIHVSSITSKRNEEEKHDAESSNLDHILRQGDNLHKVRRRSKCGLEE
RIVLKPVSKSYNKSAKVPESELQESLSKHESVQKLDKDKHSEESNPDKQPKFKQEMKFFE
ENSTELEIESEAHSLSSFQKDANHKVKGQLGEKIRERSKSDKYLSTSRLERRLSADNHKS
RNFKHNKDMKKKGDEGKSEDKGMKEVENNAKVLENLHTEKKPIKKLSNENRKVNTSTQEI
DTREGKIPAFTSPFISLQKTTGHLLYSDQTQEPMEDCCSDIHNQQSQIEEESSNNLQGRA
ELKNIVKDQIHHHLMSEFNTTYSNFSNSEEKVEVFPTKEENVSSGTFRQIPKDLSCFEKE
HHHVNAASEETDHVLPDAAHENEKLKFHGMTEDGHSPTNLTSSGHQSWKSSSSIKSLTRE
CAHQKSMDVDLPEITDPYNGSKEGSLNRSCVKYTISDSQTLDVKMKFYDNIELNANLKDD
PANIRIKNSEDTIHLPSKLIPRNRISAVAGIQEVTEQKRTESASTSILENDNLIGSEAAP
TNLSANKYVLINLEKVERDHFSENIAEYKLEIDKDQSINNLVELSSGSVPKNVSEKKIKV
SAFNKGGNDMKEVAEDNNERSVVDSSVEGSHCIVSHSSMETDANVIGTSTERPTGIPSIA
DSIKENHGDEDMSNLLTEGEAIITCSEEQRKAHLSCASIEADEGFTLSPWIKSKENAHSV
TEKAIGEWTVTTAEESGAVMEELAVCESSSTSTKERESGECSVNYIQESTKKAVNGRRDE
LDQRVNSCVTEEKDDAVTSASSEQKCVASNYVEMSRFHGGATCTGEIESDGAVTSAGTEA
QNQSMIGDPDTFQSNSVQSEQAKAAEGTVTCTAIETELIGSVICSVTGTDSQENAVTGQC
PEMVNNLATVSRADKSEDIVNGESAVSSTGIIAEDDPACTLLEENQKGFVGASDTEGKYQ
LATDSTEARTETNTVEVSQGSYIDDEGCVTSTGEKEEDEESENFVTSTGRGNEEAEHVLV
CTGTEESGMLLINMGTTEHESSVCLSTDQLGTGLDEYSLNANKSSIDIMACLSKEMKVDS
DNIKGTVASSTTSVGISNENMAFVSPKEDSLFTETLKNNNELLNEQSINQPLVSEERSEN
TESSLDNRKCGELIKMVSKEINILSASANEKDKSKGEIISTSGAKLCSISAHSVKHNEPT
LPLVARTVENLEKVKGLLTSEDFSFPAPSTTVKYMNQDGDVMKSNKVSTSILKEFATPMP
IVTVKDTDTVLATNRVVEKTSSMEINAIDMPSVFTGGSNESQVIGDEEGRDECATISTSI
IEYTETPVSEEGNEDIAQCFDPRLEQTTDTATISTSSVEHFEFSTEKQMNQISETEGKLN
FAQLATEIYNRVTHSVVPIETKHRSENTVVSPEVEKYKTVQEATSQESELDESDMHLLTK
VGICHGLEFSISEQMFIASTTEDLAKNPDRTGVAVSEEIPCTLTSTELVEKTNVCPEELD
PAMLTDLKNSKNLVELPNDGQGIQGREESREPSVISRTDGNSKSIDISTCTMESVNIVEL
PCAEISFDSCVGSRGLSAETHMAGNKSKEDGKYVKTEVTEEKDVSNSSSVPFELGENSEN
AQCSKTDVNAKVPDALVHGNIENNHESKVVRPFETDSLEPKMETATDKQLLCTNPEKELH
YEEKQPEEVLKTFENTHAMVITEAIEGQILKEKLSEPERPNQNEENFMPEAMRSPTIEED
GGTQCQILEEEAKQEINEEKTANNSEEMPECHAVAEKHSSESVKEKDKIIGRMDSSSTSG
LESSLNPVEGSSLQQVIVKRKRGRPRKYPLEIAAVQSQDSALDTVMRNVLQSSGTSSRTG
IIPEANDSLNNRSNKTEKEKSKVWLRGRKRKRACLSSEETGTNTSDSSKKRQKLISVSEE
SAKGQDDIKKKGSGDETDGDETHSGATTRAASRLEAERKQPNKPTTRASSKSQSPSSALP
KKRRKLAKKKQSSATAKVNKDPRLAQSKFQPIKRRREASPPVSHKKDHQRADETDVKKSK
R
NT seq
8646 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcaatggtggcaccctcgccgctgctgccgcggcccccaccgccgccacttct
cctcccgaacagccacctcccccaccgccgccgcctcctccgcctcccccgccacagcca
cccccgccgccgccgccgccgggaagctccgcgggcgccgccgagccagagctggtgtcg
ctcatcctgaatcgcctcaagagtcaaggccttttcgaccagttccgccgagattgcctg
gccgacgtggacaccaagcctgcatatcagaatttaagacagcgggtggacaattttgtt
tccaaccatctagcaactcatacatggagccctcatttgaacaagaaccaattaagaaat
aacatcaggcagcaggttcttaagtctggaatgttagaatctggtattgacagaatcatt
tctcaagtcgtggacccaaagatcaaccacatattcaggccacaggtagagaaggctgtc
catgagtttttagtcacaatgaatcacccagaagagatcaatcccagctttgccctgcct
gaagataaattagaagcttctgttttgctgcaaggtgttcctgctatcactccaaatatg
aatatggctaatgatgctctgtctattttggagaccataacatctcttaaccaagaagcc
agtgccaccaaggcttctacagaagcatccaacactaagacaaatgagagattctcaaag
aaactcctatctcagcacagtttggatggcagcatagagagagaccggaatgcagaagat
gttgctgatggagagaaaactccttatatctctacagaagaaagttttgaaccagtagta
aactgtgaagatataagtaattcattttcttcaaacgaagaagggaaaactatatcaaaa
gaagctagtagcctgcttaatccaagcaaggaaaattttcaggaaagtgatgaacaaaaa
agtaaactggtggataaatgtgatagaaaactggaaagcttggaaaaaggagaaaagaag
aaagaaaagaaagaaaaatctgacaaaaaagtagatttctcaaagagaaatggcgatgat
gtaaaagcaaaagaagaaaagacaataaaagataaagaaacagaagtgataaaacattta
acccttgaaaagaacactagtaaaaaaaatgaaagcacaaaagaagtgttggaagattcc
gatgtggacatactgagtgatattactgttagctccgtgcataccagtgatctttcttcg
tttgaagaagatagtgaagacctgctttctgatagcacagaagaaggagaaattgtttct
gatgacgaggaagatgaatgcagtcagattaaagcaaaatcagaggcagaagggacaaat
gataaaaaaacaaaatctggacgacatgcttacatccacaagccttacctttactccaaa
tattacagtgattcagatgatgaaagaacagtggagcaacgtcgccagtcggttgctaaa
gaaaaagaagagagatttctgaggagacagcttaacagagaaaaacttgaagaaaagagg
aaacagaaggctgcagaaaaaacaaaatctctgaaaattggccatcaaggtaaaagcatt
caaaatttggaagacctttcaggaagaagctttgatctaaaaactggtggtgccagcatt
aaggatgtgcttaaagaacaaagatttttggaaaagaaagtagcactaagcaggaaaaga
aaaagagagtcaaggcatgatgaagaggcctggaagaaaaaatgtgaacagcctgatgaa
tattttggagaatttgaaaagataaatgaaggtactgaaaagttgtcttcaaaagaaatt
aaagtcagtcaaggcaaaaatggaaataaagttgttagaaaaattgcagaattgggactt
tcaccagaggaaaacaaaagtgaaatcaaagttgaaaaggaacacaagagaagaacgtct
gcctctttccaattggaggttatccagccagatgttgaaggagaatctcaatttgagatg
gcagaggtcagtccagaagaacctcaaaagcaaaggaatgtacttaaaaatgaaaaacat
attaaaaaggatgagtcagaaacaccaggtgttaagaatgtactgaagaaggaggtgagg
ccatcaaaagataaaaatgaaaaagaaagaagtctttctgaagacaaatcattaatgaag
tataaatgtaaaggagaaaatgttcagaaaacaagtgaaaatgttgaaaatgtaccttct
gagaagaacatgagaaatgaagaaaccgttgtgaaaaataatcaactagcaaaagttttg
cctgatgataaaactgaaaagaaaaacaagcatagaagtgaaagaaaggcttccgtgaac
agcaaagagatgaaaaacatttcagaaaaaaatgagactatgcgcaaagagaccaataga
aaagagaggcagctttccacagagaaattgaaagcagagtacaaatccaggaagtttcca
aatgattctaggccaccaaaagagtcacagagtgcctcaaagattcatgtttcttccata
acatcaaaacgaaatgaagaagaaaagcatgatgcagaatcatccaatttggatcatatt
ttgcggcaaggtgataatctacacaaagtcagacgaagatcaaagtgtggcttagaagaa
aggattgtattgaaaccagtgtccaagagttataacaaatcagcaaaagtacctgaaagt
gaattacaagaaagtttatctaagcatgaatctgtgcagaaattggacaaagataaacat
tcagaagagagtaatccagataaacaacctaagttcaaacaagaaatgaaattttttgaa
gaaaattcaactgagttggaaattgaaagtgaagcacattcactaagtagtttccaaaaa
gatgctaatcataaagttaaggggcaattaggagaaaaaataagagagagaagtaaaagt
gataaatatttgagtacttctagactggaaaggagattgtcagcagataatcacaaaagc
agaaattttaagcataacaaggacatgaaaaagaaaggagatgagggaaaatcagaagac
aaaggcatgaaagaagtagaaaacaatgcaaaggtgctagaaaatctgcacacagagaag
aagcctattaaaaaattaagtaatgaaaatcgaaaggtgaatacatcaacccaagaaata
gatacgagagagggaaaaataccagccttcacaagccctttcatttctcttcaaaagact
actgggcacttactgtattctgatcaaacccaggagccaatggaagactgttgcagtgat
atacataatcaacaaagccaaattgaggaagaaagcagtaataatttacaagggagagct
gaactgaaaaatattgtcaaagaccaaatacatcatcatttaatgtctgaattcaataca
acgtattcaaatttcagtaactctgaagaaaaagtggaagtttttcctactaaggaagaa
aatgtatcaagtggcaccttcaggcagattccaaaggatttaagttgttttgaaaaagaa
catcatcatgtaaatgctgcttctgaagaaactgatcacgttttacctgatgctgctcat
gaaaatgaaaaattaaaatttcatggaatgactgaggatggtcatagtccaacgaatctt
acaagtagcggtcatcaaagttggaaaagtagttcgtcaataaagagtttaacaagagaa
tgtgcacatcagaaatctatggatgtagatcttccagaaatcactgatccttataatgga
tctaaagagggatctttgaatagatcttgtgttaaatatactatttcagatagtcaaacc
cttgatgttaaaatgaaattttatgataacatcgaactcaatgcaaacctgaaagatgat
cctgccaatataagaattaaaaactcagaggacacaatacatttaccttctaaattaata
cctagaaataggataagtgctgtagcaggcattcaggaagttactgagcaaaaaagaact
gaaagtgcatcaactagtatcttagagaatgataatctcattggttcagaagcagcacct
acaaatttaagtgcaaacaaatatgttttaatcaacttggagaaagtagaaagggatcat
ttcagtgagaatattgcagaatataaactggaaatagacaaagatcagagtattaataat
ttagtagaattgtcttcaggttcagtgcccaagaatgtttcagaaaaaaaaatcaaagta
tctgcattcaacaaaggaggaaatgatatgaaagaagttgctgaagataataatgaaaga
agtgtagtagacagtagtgtagaaggtagccattgcattgttagtcacagtagcatggaa
actgatgcaaatgttataggaactagcacagaaagacctactgggatcccttccatagct
gatagtattaaagaaaaccatggagatgaagacatgtcaaatttgctgactgaaggtgaa
gccattattacttgctcagaagaacaaagaaaggctcatttaagttgtgcaagtatagaa
gcagatgaaggtttcactttgagtccgtggatcaaaagtaaagaaaatgcccattctgtg
acagaaaaagcaattggtgagtggactgtcacaacggctgaagaaagtggtgctgttatg
gaagagcttgcagtatgtgagagttcttcaaccagtacaaaggaaagagaaagtggtgaa
tgctctgtgaattacatacaagaaagtacaaagaaggcagtcaatggaagaagagatgaa
cttgatcaacgtgtgaatagctgtgtaacagaagagaaagatgatgctgtaaccagtgca
agctctgaacaaaaatgtgtggcttccaactatgttgaaatgagcagatttcatggtggt
gccacatgcacaggtgaaatagaaagtgatggtgctgtaaccagtgcaggtactgaagct
cagaatcagtctatgattggtgatccagatacctttcagagtaactcagttcaatctgaa
caagctaaagcagctgagggcactgtgacttgtacagctatagaaactgagctcattggt
tctgttatctgttcagtgactggtacagattcacaagagaatgctgtaacagggcaatgc
cctgaaatggtaaataacctagcaacagtatcccgtgctgacaaaagtgaagacattgta
aatggtgagagtgctgtcagtagcacaggaataatagcagaagatgatcctgcttgtact
cttttggaggaaaaccagaaaggatttgtaggagcctcagacacagaaggaaaatatcaa
cttgccacagacagtacagaagctagaactgaaacaaatactgttgaagtcagtcaaggt
tcatatattgatgatgaaggttgtgtaaccagcacaggtgaaaaagaagaagatgaagaa
agtgaaaattttgtaactagtacaggaagaggcaatgaagaagcagaacatgtgttggtt
tgtacaggaacagaagaaagtggaatgttgcttattaacatgggaactacagaacatgaa
agttctgtctgtctatctacagatcagcttggaacagggttggatgaatattcattaaat
gcaaataaaagttctattgatattatggcatgcttatcaaaagaaatgaaggttgatagt
gataatataaaggggacagttgcaagtagcaccactagtgttggcataagtaatgaaaat
atggcatttgtctccccgaaagaggattctctgttcaccgagacacttaagaataacaat
gaactcttaaatgaacaaagtataaatcaaccattggttagtgaagagcggagtgagaac
actgaatcttccttggataacaggaaatgtggagaactgattaagatggtatctaaggaa
ataaatatactttcagcatctgctaatgaaaaggataaaagtaaaggtgaaatcatctct
acaagtggggccaaattgtgctctatttcagcacattctgtcaagcacaatgagccaaca
ttaccacttgttgctagaacagttgaaaacttagagaaggtcaaaggtctactaacatct
gaagatttcagttttcctgcaccaagtacaactgtcaaatatatgaatcaagatggagat
gttatgaaatctaataaagtttctactagtattttaaaagaatttgcaactccaatgcca
atcgtaacagtgaaagatactgacactgtacttgccactaacagagttgtagagaaaacc
agcagcatggagataaatgccattgatatgcccagtgtattcactggaggaagcaatgaa
agccaggtgattggtgatgaagagggaagggatgaatgtgctacaatttccacaagtata
attgaatacacagaaactcctgtttcagaggaaggcaatgaagacattgctcaatgcttt
gatccaagactggagcaaactactgatactgccacaatctcaacaagttcagtagaacat
tttgaattttctactgagaaacaaatgaatcagatctctgaaacagaaggaaaattgaat
tttgctcagcttgcaactgagatatataacagagttacacatagtgtagtgccaatagaa
acaaaacacagaagtgaaaatacagtggtctctccagaagtagaaaagtacaagactgtt
caagaagctacaagccaagaatctgaattagatgaaagtgacatgcatttacttacaaaa
gtaggaatatgtcatggccttgaattcagtatatctgaacagatgtttattgcttcaact
acagaggatcttgcaaagaatcctgacagaacaggggttgccgtctcagaagaaattcca
tgtacattgacaagcacagaattggtagagaaaaccaatgtgtgccctgaagaattggat
cccgctatgttgacagatttaaaaaacagtaagaatttagttgagttacctaatgatggc
caagggatccagggcagggaggaaagcagagaaccttcagtgatatccaggactgatggc
aatagtaaaagcatagacatttccacatgtacaatggaatctgttaatatagttgaactt
ccctgtgcagaaataagttttgattcctgtgtcggtagccgtggtctatctgctgaaaca
catatggctggaaataaatccaaagaagatgggaaatatgtaaaaactgaagttactgaa
gaaaaggatgtctccaactccagttcagtaccatttgaattaggagaaaattctgagaat
gctcaatgtagcaagactgatgtaaatgctaaagtaccagatgctcttgttcatggaaat
atagaaaacaatcatgagagtaaagtggtgcgtccatttgagactgacagtctggaacca
aagatggagacagcaactgacaagcagctgttgtgtacaaatccagaaaaagaacttcac
tatgaagagaaacagcccgaagaggttctcaaaacctttgaaaatacacatgctatggtc
ataacagaagcaatagaaggtcaaattcttaaagaaaaattatcagagccagaaagacct
aatcagaacgaagagaatttcatgccagaagcaatgaggagtcctactattgaagaggat
ggtggtacacaatgccagattttggaagaggaggccaaacaagaaattaatgaggaaaaa
actgccaacaactcagaagaaatgcctgaatgtcatgctgtggctgagaaacattcctca
gaatctgtaaaagaaaaagacaaaattattggcagaatggatagttctagcacttcaggt
ctggaatccagtttgaatcctgttgagggaagcagtctgcagcaagtaatagttaaacga
aaaagaggaagacctcgcaaatatcctcttgaaatagcagcagtgcagagtcaggattca
gcattggacacagtcatgagaaatgtactgcagtcttcaggcactagcagtagaacaggg
ataataccagaagccaatgattctttgaacaatagaagcaataaaactgaaaaagagaag
agcaaggtgtggttaagaggaagaaaacggaaacgggcttgtctttcatcagaggaaaca
ggaacaaacacatctgattcatctaaaaaacgtcagaagctcatatcagtctctgaagaa
agcgctaagggccaggatgacatcaagaagaaaggaagtggtgatgaaacagatggagat
gagacgcattcaggagccacaactagggcagcatcaagattggaagcagaaaggaagcag
ccaaacaagccaacaacccgagcctcatcgaaaagccagagtccatcctcagctcttcct
aaaaaacgtcgaaaattagcaaagaagaagcagtcatctgccactgcaaaagtgaacaaa
gatcctcgcttggcccaatcaaaatttcaacccatcaagcgcagaagggaagcgagcccc
ccagtgtcacataagaaggatcaccagagggctgatgagactgacgtgaaaaagtccaag
cgatag
DBGET
integrated database retrieval system
