Thamnophis sirtalis (common garter snake): 106550428
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Entry
106550428 CDS
T06107
Symbol
PAN3
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106550428 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106550428 (PAN3)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106550428 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
106550428 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Pkinase
Torus
Motif
Other DBs
NCBI-GeneID:
106550428
NCBI-ProteinID:
XP_013923810
UniProt:
A0A6I9YJ47
LinkDB
All DBs
Position
Unknown
AA seq
889 aa
AA seq
DB search
MNSGGLPCSSPVAPAAAVVGPPPGPGVPAAVAAPGGLKLKFCRYYAKDKTCFYGEECQFL
HEEPGGASAACPGPPPPVALGGLPLGLPPGPAAPSVAASPGHGGSGGYPGHGVAAPGAGP
KKPPELLGGGGGAAGGGGLDGPRLAIPGIDGSALAEASLTDSYFSTSFVGVNGFGSPAES
KYPMMQRMTNSSSSPSLLNDSAKPYAGHDPLTSPSSSLFNDFAALSLSQRRKPRKYRLGM
LEERIVPVGSKARKSKNTIGCLADRCKTGVPINMIWWNRVTENNLQTPNPTASEFIPKGG
SNSRLGNMSHSNISAFSQALFSHPSMGNPANPGLAPGMSLSAGSSPLHSPKITPHTSPAP
RRRSHTPNPANYMVPTSASTPVTNAVSQPPTTGQVIQKETVGGTTYFYTDTTPAPLTGMV
FPNYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADMPAVPTEVD
SYHSLFPLEPLPPPNRIQKTSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLV
DMWKKIQHSNIITLREVFTTKAFGEHSLVFAYDFHAGGETMMSRHFNDPSADGYFTKRKW
GQHDGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILVTGKTRLRVN
CVGVFDVLTFDNSQNNPLALMAQYQQADLISLGKVVLALACNSLAGIQRENLQKAMELVT
INYSSDLKNLILYLLTDQNRLRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNG
RLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIISC
LNKLDAGVPEKISLISRDEKSVLVVAYSDLKRCFENTFQELIAATNGQL
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggcggcctcccctgctcctctccggtggctcccgccgcggcggtagtaggg
ccgccccccgggccgggagttccggcggcggtggcggcccccggcgggctgaagctcaag
ttctgccgctactacgccaaggacaagacgtgcttttacggcgaggaatgccagttcctg
cacgaggagcccggcggagcttccgccgcctgtcccggccctccgccgccggtcgccctc
ggtgggcttccgctcgggctcccgccgggccccgccgctccttccgtcgccgcctcgccg
gggcacggcggtagcggcggctatccgggacacggggtcgcggcgcctggagcggggcct
aagaaaccccccgagctgctgggaggaggcggcggagcagcaggcggcggggggctcgac
ggaccccggctggccattccgggtatagatgggagtgccctggctgaagctagtcttaca
gactcctatttcagcaccagttttgttggagtcaatgggtttggaagtcctgcagaatca
aagtatcctatgatgcagaggatgacaaatagcagcagttcacctagccttcttaatgac
agtgccaagccatatgcaggccacgatcctcttacttcacctagttcatccttgtttaat
gattttgctgccctcagcttatctcaaagaagaaaaccaagaaagtatcgactggggatg
ctggaagagaggatagttccggtgggatcaaaggcacggaaatcaaagaacactattggc
tgcttggctgacaggtgtaaaacaggagtacccatcaatatgatttggtggaacagagtc
acagaaaacaatttacagacgccaaatcccactgcaagtgagtttattcctaaaggagga
tcaaactcccgacttggtaatatgtcacactcaaatatatctgccttctctcaagccttg
ttctctcatccttccatgggaaatcctgcaaatcctgggttagctccaggaatgtcactg
tcagcaggatcgtcaccccttcattctcctaaaatcacccctcacacatctcctgctcct
agacgaagaagtcacactccgaacccagcaaattatatggtgcctactagtgcctctaca
ccagttactaatgctgtctcacagccccccacaactggccaagtgattcagaaagaaacg
gtgggtggaacaacctatttctatactgacacaactccagcacctctaactggaatggta
ttcccaaattatcacatttaccctccaactgcacctcatgttgcttatatgcaaccaaaa
gctaatgcaccttccttcttcatggctgatgaactcagacaggagctgatcaacagacac
ttaattacaatggctcagatagatcaagcagacatgcctgctgtcccaacagaagttgac
agctaccacagccttttccctttagaaccactgccaccacccaatcggatacagaaaaca
agcaactttgggtacataacatcatgctacaaagctgtaaatagcaaagatgatctgcca
tattgccttcggaggatacatggttttcgtcttgttaatacaaagtgcatggtattagtt
gacatgtggaaaaaaatccagcattcaaatatcataacattgcgagaagtattcaccact
aaagcatttggagagcattctcttgtgtttgcatatgatttccatgctggaggagagaca
atgatgagcagacatttcaatgatcccagtgctgatggctacttcacaaaacggaagtgg
ggtcagcatgatggacctctgccccgacaacatgcagggttactgcccgagtccctgatt
tgggcctatattgtgcagcttagctcggcattgcggactattcatacagcaggattggcc
tgtcgagtaatggatcccacaaagattctggtgacaggcaaaacaaggttgagagtgaat
tgcgttggagtctttgatgtattaacgtttgataacagccaaaataatcctttggctcta
atggcccaatatcagcaagcagatttgatctctcttgggaaggttgtgctggctttggct
tgcaattctttggcaggaattcagagagagaatttgcagaaagcaatggaactggtgaca
atcaactattcctctgatttgaagaatcttattttatatttgctgactgaccaaaacagg
cttcgaagtgtaaatgatataatgcctatgattggtgcaagattctatactcagttggat
gctgcccaaatgaggaacgatgttatagaagaagatcttgcaaaggaagttcagaatgga
agattatttcgtcttcttgcaaaattgggaacaatcaatgaaagaccagagttccagaag
gatccgacatggtcggaaactggagacaggtatctcctgaagctttttagggatcatctt
ttccatcaggtgacagaagcgggtactccttggattgatctcagtcacattatctcttgt
cttaacaagttagatgctggtgtgccagaaaaaataagcctcatttccagagatgagaag
agtgtccttgtggtggcatatagcgacctaaaacgctgctttgaaaatacttttcaggaa
ctgattgcagccacaaatggccagttgtag
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