Thamnophis sirtalis (common garter snake): 106551194
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Entry
106551194 CDS
T06107
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106551194 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106551194 (SMARCC1)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106551194 (SMARCC1)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106551194 (SMARCC1)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106551194 (SMARCC1)
PBAF complex
106551194 (SMARCC1)
GBAF(ncBAF) complex
106551194 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
106551194
NCBI-ProteinID:
XP_013924714
UniProt:
A0A6I9YL04
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MAAASASVTAASSPVSGPGTVVGGSGPGSASSSSSSSSFSSAGPLSLSRRKDGGPAGKFW
ESADTASQLEAARVWLAKHYKKYVQADAPTNKTLAGLVSQLLQFQEDAFGKHVANPAFTK
FPAKCFLDFKAGGTLCYILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNN
CLSRPSIYLIPDIELKVANKLKDIVKRHQGTITDDKSKATHHIYPVPTSLDEDDWLRPVM
RKDKQVLVHWGYYPDSYDTWVHASEVEAEIEEPPIPEKPWKVYARWILDMDVFNEWMNEE
DYEVDENKKPVSFRQRIYLRNEEPVRSPERRDRKAATGTRKRKASPSPPPPPTPVESRKK
VGKKGQASLYGKRRGQKEEEEQDDLTKDMEDPTPVPNVEEVALPKNVNPKKDSENTPVKG
GTVADLDEQDEETMTAGAKEDEDPNKGDQGRSLDTGEDNVTEQTNHIIIPSYASWFDYNC
IHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAV
MRVHAFLEQWGLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHLRTAQIPASQQM
LNFPEKNKEKPTDLQNFGLRTDIYSKKTLAKSKSANAGREWTEQETLLLLEALEMYKDDW
NKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSSLGPLAYQPVPFSQSGNPVMSTVAFL
ASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHIRKVQEAARVSGKVDPTYGLESSCI
AGTAPDEPEKMDGAQEDKMETDADAPQTEKVKVESKGENEIDANKLTEGDEERIAEKEQD
SDVSQDSKQDDKNADDNKENFDVGKEKEVGGGKRRSEHELSEGNVATAAAAALASAATKA
KHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQN
FHMEQLKYAELRARQQLEQQQQQQQQQQSQNAQQSHQHTSGPGMNPLGTALSSHQQPPPY
PMMLHQMPPPHPPQPGPILGQGSMMPGQPLPGRIMPTGTTNAPSATSTNIPPSGTGNIVG
PRGQLASPNGLYPQPPPPPPPPPADGATPPPTGPIPASTAP
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcctcggcctcggtaacggcggcctcgagtcccgtgtcggggcctggaacc
gtcgtcggaggcagcgggcccggttcggcttcttcgtcctcgtcgtcgtcgtcgttttct
tccgccggccctttgtcgctttcccgccggaaagacggaggccccgccgggaaattctgg
gaaagcgccgacacggcttcgcagttggaagccgcccgggtttggctggctaagcattac
aagaagtatgtccaggccgatgcaccgaccaataaaaccctggctgggctggtttcccaa
ttgctgcagttccaggaagatgccttcggaaaacacgtggccaatcctgcctttaccaag
tttccggccaagtgcttcctggatttcaaagctggaggaacgttgtgttacatcctcggt
gccgcttacaagtacaagaacgagcaaggatggaggagattcgacttgcaaaacccttca
cggatggaccgaaacgtggaaatgtttatgaacatcgaaaaaacattagtgcagaataac
tgtctaagcagaccaagcatctacctcattccggacatcgagctgaaagtggctaacaag
ctcaaagacattgtcaagcgccatcaggggaccatcacagacgacaagtcgaaagccaca
catcatatataccctgttcctacctcactggatgaagatgactggctgagacccgtgatg
agaaaagacaagcaagttctggtgcattggggttattacccagacagctacgacacctgg
gtccatgcgagcgaagtcgaagcggagatcgaagagcctcccattcctgaaaagccctgg
aaggtctacgcccgatggatcctggacatggacgttttcaacgaatggatgaacgaagaa
gactacgaggtggatgagaacaagaagccagtcagctttcgacaacggatttacctgaga
aatgaagagccggtccgtagccccgaacgacgagatagaaaggcagctaccgggacccgg
aagaggaaagcctctccttcacccccaccacctcccaccccggtggaatccaggaagaaa
gttggcaagaagggacaagccagcctctacgggaagcgacgcggtcagaaagaagaggag
gagcaggacgatctgaccaaggacatggaggaccccacccctgtgccgaacgttgaggag
gtggcccttcccaaaaacgtcaatccgaagaaggacagcgaaaacaccccggtcaaagga
ggcaccgtcgcggatcttgatgaacaagacgaagagacaatgacggccggagcaaaggag
gacgaggatcccaacaaaggggaccagggacgatccctcgacaccggagaagacaacgtc
actgaacagaccaaccacatcatcattcccagctacgcctcgtggttcgactacaattgc
atccatgtcatcgaacgccgggcgcttcccgaattcttcaatgggaaaaacaaatccaag
actccggaaatatacttagcataccgcaatttcatgatcgacacctaccgcttgaaccct
caagaatatttgaccagcacggcctgccgaagaaacttgaccggcgacgtttgtgcagtc
atgagggtccacgcctttctggagcagtgggggctgatcaattaccaagtggatccagaa
agtcgacccatggccatgggacccccacccaccccccacttcaatgtgctggcggacacc
ccttcgggactcatgccgctccacctgcggaccgctcagattccagcttcccaacaaatg
ctgaacttcccggagaaaaacaaagaaaaacccaccgatctgcagaattttggcctccgg
acggacatctactccaagaaaactttagccaagagcaaaagcgccaacgctggccgagaa
tggacagaacaagagactctgcttctgcttgaggcgttggagatgtacaaggatgattgg
aataaagtctccgagcatgtcgggagtcgaacccaggacgagtgcatcctccattttctc
aggctccccatcgaagacccttacctggagaattcggactcctccctcggacccttggcc
taccagcccgtcccattcagccaatccgggaatccggttatgagcaccgtggctttcctg
gcctcagtggtggatcctcgggtggcttcggcggccgccaaagcagctttagaggaattt
tcccgcgtccgagaagaagtccctctggaactggtggaggcccacatcaggaaggtccaa
gaagccgcccgggtttcggggaaagtggaccccacttatgggctcgagagtagctgcatc
gctggaacggcccctgacgagccagagaaaatggatggagcccaagaggacaagatggag
acggacgcagacgccccacagacagagaaagtcaaggtcgagagcaaaggggagaacgaa
atagacgcaaacaagctaacagaaggagatgaggagagaatcgctgaaaaggagcaagat
agcgacgtgtctcaagattcgaaacaagacgacaagaacgctgatgacaacaaggagaac
ttcgacgtcggcaaggagaaggaagtcggtggcgggaagcggcgctctgagcacgaactc
tccgaagggaacgtcgccacggctgcagctgccgctctggcttcagccgccaccaaagcc
aagcatctggctgccgtggaggaacggaagatcaaatctctggtggccctcttggtggaa
acccagatgaagaaactggagatcaaacttcgtcattttgaagagctggaaaccatcatg
gaccgagagaaggaagcgttggagcagcaaagacagcagctgctcaccgagcgtcaaaac
ttccacatggagcagctgaaatacgccgaactccgagcccggcaacaattagaacagcag
cagcaacaacagcagcaacaacagagccagaacgcacaacaatcgcaccagcacaccagt
ggtccaggcatgaatcctctggggacagccttgtcatctcaccagcagcctcccccttac
cccatgatgcttcaccagatgcccccacctcaccctcctcaaccaggtcccatcctcgga
cagggctccatgatgcccggacagcccctgccaggccgtatcatgcccaccgggaccacc
aacgccccttcagccaccagcactaacatcccaccctcaggcacagggaacatcgtcggc
ccccgggggcagctggcctctccaaacggcttgtatcctcagccgccgcctcctcctcct
cctcctccagccgacggggcaacgccgccacccacaggacccatcccggcctccacagca
ccctga
DBGET
integrated database retrieval system
