Thamnophis sirtalis (common garter snake): 106551879
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Entry
106551879 CDS
T06107
Symbol
PAXBP1
Name
(RefSeq) PAX3- and PAX7-binding protein 1
KO
K13211
GC-rich sequence DNA-binding factor
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsr03041
]
106551879 (PAXBP1)
Spliceosome [BR:
tsr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
106551879 (PAXBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GCFC
Dynein_C
DUF1687
Motif
Other DBs
NCBI-GeneID:
106551879
NCBI-ProteinID:
XP_013925516
UniProt:
A0A6I9YMZ8
LinkDB
All DBs
Position
Unknown
AA seq
961 aa
AA seq
DB search
MFRKARRVNVRKRNESEDDDEERDEALPSQPPPLPEGDGPAAEPELPAPKPPLLPLPTGC
VPLVSTAAAASSGGGFAFSSPEAVVRGGPNLPAPELQPPQPPMALLPPPPPSQQLPLGNN
GHVSSVSKPKERKRGKELGAAPGVPRGSRNLLSFQDEEEEIDVFKVKKSSYSKKIVKLLK
KEYKEDLEKSKTKPETNSSVDDEQTADKLELFKDPVQEDGATNSEQGEEEMEVESEKEDE
KNKAAGAFSSALSSLNVLRPGEIPDAAFIHAARKKRQMAREHGDFLPLDNDPGKGRLVRE
DENDASDDEDDDEKRRIVFSVKEKSQRQKIAEEIGIEGSDDEALIAGEQDEELCRWEQEQ
IRKGINIPQVQASHPAEVNNLYYQNAYQTMPYGSSYGMPYTYAAYGSETKSQKTDNIIPF
KTPSNEMAPVTIDLVKKQLKDRLESMKEFHKANQQHHERHQQNRDDSIKTIERLEGSSGG
IGERYKFLQEMRGYVQDLLECFSEKVLLINELETAMHQLYKQRASRLVQRRQDDIKDESS
EFSSHSNKALMAPNLDSFGRDRNLYQEHVKRRTAEREARRARRRLAREQSGKMVDHLEGL
SSDDEETSTDTTNFNMERDRILKESSKVFEDVLENFSSIDYIKSQFEAWRSKYLSSYKDA
YIGLCLPKLLNPLIRLQLLTWNPLEDKCQDFESMLWFESLLFYGCEEYDQEKDDADVSLL
PTIVERVVLPKLTVLAENVWDPFSTTQTSRMIAITQKLINGYPTVVHAENKNTQTLLKGL
LLRMRRTLDDDVFMPLYPKSVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQ
ELSIDSLLNRYILMAFQNSEYGDDSIKKAQSVINCFPKQWFTNLKGNKTVPHLENLCRYL
VHLADTMYRNSIGSSDVEKRNSREHIKQVIKLLSSIRALDHAFTVASDHNVKELKNLSDG
K
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgttccgcaaggcacggcgcgtgaatgtgcggaagcggaacgagtccgaggacgacgac
gaagagcgagatgaagcgttaccgtcgcagccgccgccgctgccagaaggtgatgggcct
gcggcagagcccgaactgccagcgcctaagccgccgttgctgcctctcccgaccggctgc
gttcctctggtctccaccgccgccgccgcgtcctccggcggaggcttcgctttcagcagt
cctgaggcggtggtccggggaggccccaatttgccggccccggaattgcagccgccgcaa
cccccgatggcgcttctaccgccgccgccgccttcgcagcagctgccattgggaaacaac
gggcacgtgtcctctgtttctaagccgaaggagcggaaaaggggcaaagaactgggggcc
gcgcctggggtgccccgcggaagccgcaacctgctcagcttccaggacgaagaagaggaa
atcgacgtttttaaagtgaagaaatcaagttacagcaaaaagatagtaaagctgcttaag
aaagaatacaaagaagatcttgaaaaatcaaagacaaaaccagaaacaaattcttcagta
gatgatgaacaaactgcagacaaactagaactgtttaaagatccagttcaggaagatggg
gctacaaatagtgaacaaggggaagaagaaatggaagttgaaagtgagaaggaagatgaa
aaaaacaaagctgcaggagcattttccagtgctttgtcatctctaaatgttcttcgtcca
ggagaaattccagatgctgcttttattcatgctgctaggaaaaagcgccaaatggctcgt
gaacatggtgactttcttccccttgacaatgatcctggtaaagggcgtcttgtgagagaa
gatgaaaatgatgccagtgatgatgaggatgatgatgagaagcgaagaatcgttttttca
gtgaaggagaagtcccaaaggcaaaagattgcagaagaaataggtattgagggaagtgat
gatgaagctctgattgctggagaacaggatgaagaactatgccggtgggagcaagaacag
atacggaaaggcattaatatacctcaggttcaagcaagtcatcctgctgaagtgaataac
ctctactaccagaatgcttaccagactatgccttatggttcatcttatggcatgccgtac
acatatgctgcatatggatcagagacaaagtctcaaaaaacagataacataatacctttc
aaaacccccagtaatgagatggctcctgttactattgatttggtaaagaaacagcttaaa
gacaggttggagtcaatgaaagaatttcacaaagcgaatcaacaacaccacgagaggcat
cagcaaaaccgtgatgattctatcaagacaattgaaagattagaagggtcttctgggggt
attggtgaacggtataaatttctgcaagaaatgcgagggtatgtccaagacttgcttgag
tgtttcagtgaaaaggtgctcctgattaacgaacttgaaacagcaatgcaccagctgtac
aaacagcgcgcctcccgccttgtccaaagacgacaagatgatattaaagatgaatcttcg
gagttttcaagccattcaaataaagcactgatggcaccaaaccttgattctttcgggcga
gatagaaacctctaccaagaacatgtaaaaagacggactgcagaaagggaagctagaaga
gctcgtcgtagacttgccagagagcagtctgggaaaatggttgatcatcttgagggtctt
tctagtgatgatgaagaaacctcaacagacacaacaaacttcaatatggaacgagatcgc
attttgaaggagtccagcaaagtttttgaggatgtattagaaaacttttcctccattgac
tatattaagtcacaatttgaagcctggcgttctaagtatttgtcttcatataaagatgct
tatattggcctttgcttacccaagctattaaatcctttaataagacttcagttacttacc
tggaatcctttggaggacaaatgtcaagattttgaaagtatgctgtggtttgaatccttg
ctattttatggatgtgaagaatatgatcaggaaaaagatgatgctgatgtttcactattg
cctactattgttgaaagagtggttttaccaaaattaacagtgctggctgaaaatgtatgg
gaccccttttctacaacccaaacatccaggatgattgctattacccagaaactaattaat
ggatatcctacagtagtacatgcagaaaacaaaaatacacagacattactcaaaggcctc
ttacttagaatgaggcgaacactagatgatgatgtgttcatgccgctttatcccaaaagt
gttttagaaaacaagaactctggaccttacttgtttttccagcgccagttttggtcttca
gttaagctattaggaaactttctgcagtggtatggaatattctccaacaaaacattacaa
gaattatcaatagatagtttgctaaatagatacattcttatggctttccagaattctgag
tatggagatgatagcattaagaaagctcaaagtgtaattaactgcttccctaaacaatgg
ttcactaatcttaaaggaaataagacagtacctcatcttgaaaatctctgtagatatctt
gttcaccttgctgatacaatgtacagaaatagcattggaagctctgatgtagagaaaaga
aattcaagggaacatataaaacaggtaataaaacttctatcaagtattcgagcactggac
catgcttttacagtcgcaagtgatcataatgtgaaagagttaaagaacctaagtgacggg
aaataa
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