Thamnophis sirtalis (common garter snake): 106553823
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Entry
106553823 CDS
T06107
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03015
mRNA surveillance pathway
tsr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106553823 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
106553823 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106553823 (CPSF6)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
106553823 (CPSF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
106553823
NCBI-ProteinID:
XP_013927869
UniProt:
A0A6I9YW95
LinkDB
All DBs
Position
Unknown
AA seq
583 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSV
GDDVGKGSAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFELQSRKTTQSGQM
SGEGKAGPPGGSSRATFPPSNRGRGRFPGALPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLTGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPANSGIPTSDSRGPPPSDPYGRPPPYDRGDYGPPGRRFTGNNMSIREQLHMPLYWR
QTKNNTQNAGREIDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAAEYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRSREKSRR
HKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatagacatttacgccgatgtaggagaggagtttaaccag
gaagctgaatatggtgggcatgatcagatagatctgtatgacgatgtcatctctccatct
gccaataacggcgatgcaccagaggatcgtgattatatggattctcttccaccatctgtt
ggagatgatgtgggcaaaggatcagcaccaaatgttgtctatacatatacagggaagaga
attgcattatatattgggaatcttacttggtggaccacagatgaagatttaactgaagca
gttcattcacttggtgtaaatgatattttggagataaaattttttgaaaaccgtgctaat
ggccaatctaagggatttgctcttgtgggtgtgggatctgaggcatcttccaaaaagctg
atggacctattgcccaaaagagagttacatggtcaaaatcctgttgtaactccttgtaat
aagcaatttctcagtcaatttgaactgcaatcgagaaaaactacacaatcaggccagatg
tctggtgaaggcaaagctggtcccccaggaggcagttcacgagcaacttttcctccaagt
aacagagggaggggccgttttccaggtgcccttcctggaggggacagatttccaggacca
gctggacccggagggccccctccaccttttccagctggacagactcctccacgtccacct
ctaggtcctccgggcccaccaggcccaccaggtcctcctccacctggccaggttctgcct
cctccactaactggtcctcctaatcgtggtgaccgtccccctcctccagttctgtttcca
ggacaaccgtttggccaacctccattgggtccacttccgcctggtcctccacctccagta
cctggctatggtcctccaccaggtcctcctcccccacagcaaggtcctcctccacctcca
ggtcctttcccccctcgtccacctggtcctttaggaccaccccttacactggctcctcct
cctcacttacctggaccaccaccaggtgctccccctcctgccccacacgtgaatccagct
ttcttccccccaccagccaatagtggcatacctacatcagacagtcgtggtccaccacct
tcagacccatatggccgacctccaccatatgacagaggtgattatgggccaccaggcagg
cgtttcactggaaataacatgtccataagagaacaattacatatgccattgtattggaga
caaacgaaaaataatactcaaaacgcagggagagaaatagatgctgcaaggacaccatta
agtgaagcagaatttgaagaaattatgaatagaaatagggctatctctagcagtgccatt
tcaagagctgtatcagatgcaagtgctgcggaatatggaagtgctatagaaaccttggtg
actgcaatttcattaattaaacagtccaaagtatctgcagatgatcgctgcaaagtactt
attagctctctgcaagattgtcttcatgggattgaatcaaagtcttacggttctgggtca
agaagacgtgaacggtcaagggagagagaccatagtagatcaagagagaaaagtcgacgc
cataaatctcgtagcagagatcgccatgatgattattaccgggaaagaagccgtgaacgt
gagaggcatcgtgaccgtgatagagaccgtgatagagagcgtgatagggaacgagaatat
cgtcatcgttaa
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